XLOC_000693 (si:ch211-213b8.4)


Basic Information

Item Value
gene id XLOC_000693
gene name si:ch211-213b8.4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 53515089 ~ 53535565 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00001167
AAAACACCAGAATAAAAGAAGTTGAGGACATCAATGACAACTCTCCGATCTTCGAGAGCAAAACATACAGCGCAACAGTGTCTGAGAAACTGGCTGTGGGTTCAGATGTGCTCAGGGTAAAAGCTGAAGATATAGATATTTCTCTAGAAAACAGCAGAATTACATATTCTATATTGCCTCCAGCACCAGAGGACTTTGAAGTGAGAAGTGATGGAAATATCAGGTTGTTGAATCGCCTGAACTACAACAACTTTCACCAGTACATCTTCACAGTGGAAGCTCAAGATCCAGGAGGACTCAGTGACACCACAACCGTTACAATAACCATTGTTGACAATGACAATCTAAACCCTTATTTTGATCACATCCTCTACAAGGCAACCATTAAGGAAAATGAGATCGGACATTTCTCAGACGTCACTCCTGAGGCTATAAAAGCGCAAGATGGCGACACGGGCATCAACGAGCCTGTAGTTTACAGCCTAACAACAGTTCTTCCAAATGAATATCAGAGCATCTTTGATATCAACCGAGACAGTGGAGTCATTTCTGTGTCAACAGCCCTGGACAGAGAGGAGATTGACCAGATAACCCTGTACATACAGgCAGCTCAGCAGAATGATTCCAGTAAGACGGCCAACGCGGTGGTATCTGTTATTATTGAGGATGTAGATGACAACTCACCCAAATTTGACCAGGAAGAGTACATCATATCTATTCCAGAAAATTCTCCAAAGGATCAGTTTATGCTTCAGACAATAGTCACTGACCTAGACCTGgATGGGTTCTCTAAGGGTCACTTTATTATGGATAGCGATATCTTTGTTATCAACAGTCAAGGACTTATATCACTCGGGAGAGATGCCACCTTGGATAGAGAAACTAATGACCATTACACGCTAGAGGTAGTTGCCGTAGACCAGCCTGTTGATGGTTTAAGGTCCACagctcaggtcatcatcactgtcctggacatcaacaacaacaacccacAATTCCTTCCTCTGCCAGAGCCCATTGAGATTCAGGAAGGCGAATATACGCAGTCATCACCTGGAGAGGTGTGCAAAATTTCAGCAACAGATGCTGATATTGGAGATAATGGACTTTTCAGCTTCTCTACTTCTTCTTACAGCAAATACTTCATTTGCAGTGATGATGGGACTCTACAAGCTATCAGTGAGTTGGATCGAGAGATGCATGATGTCTATGATGTGGTCATCACTGCTGTGGATCATGGGATACCACAGTTAAATAATATGACCACAGTGAGGGTCAGTATCACAGATGTCAATGACAATGCTCCAGTCTTCAGCTCGGAGACTTACAGCAGAAGTATTCTGGTTAGAGACGCAAAGGTTGGAGAGTTGCTGCTGACAGTCTCTGCCACAGATAAAGATGCTGGAGACAATGCACTTATTACCTACAGTTTCTCTGAGGTTTCCTCTATTGTTGCACTGGATGCTGAAACAGGCGACATCACTTTGACCTCTGACCTTAGTGAGGTCACAGAAGACACACTGCTAACCCTTAGTGTTATAGCAACAGATCATGGAGCAACACCTTTATCTGATGAAGCCGAAATCTTGATCCACTTCAAAATTGCTGAGAGTGTGTATTTTGAGAGTTCCTCCTACAACTTCATGATCAAGGAGAATGAACCCGAGGAGACAATAGTAGGCACGGTCAAGGCATTAACAGGGAGTCCACTGGTTACAGTCAACTATAACATGAAGTCACACGAGGACGTCTTCTCTGTGGATGCTGAGGGAACCATAAAAGCTCTAAAACTACTTGACAAGGAGGACGTGGAGTGGTACATCCTCACTGTAGAGGCTATAGACTCCAGAACTCCTCCGAACACTGCAGAGACAACGGTCAGTGTTGAGGTTGAGAATGTGAATGAGGCTCCTGTATTCGACGCTGAAAAATATACAGCGAGCATTTTCAATATTGCTCCATACAAATTCCCTATAGTAAAAGTCCAGGCATCAGACCCTGATGTGGATGAGAGCTTGGAACTGCAGTATTCACTGGTGAAGCCCACTACTGTACTGGATATTGAGGCAAGCACTGGTCAGCTCTACGTTCTGGATGTGTCCAGTATTGTAGACTTTCTGGTCACCTATGAGGTTAAAGCCACTGATAAAAATGGACTTTTCACGATGACGACAGTAGAGGTACACATGAAAGAAAGCCGGTATGGTAACAGCGTCACTGTCATCTCTATAAATCAGCCTGTGTACAAAGTGGAAAAGATGATACCAGAGATAGAAGATTCCATGAAGACAGCTTTTGGCTGGACTGTGAAAATCCTCAGTGTGACAGCAGATGGTGGGAATAAAATACGGATTAATTCTCGAAAATCTACAGACAAGACCTACATTAGCTTTATCGCAATGGACTCCAGTGGCAGCATCATTGAAGCAGATGAAGTAAAAGA

Function

symbol description
si:ch211-213b8.4 Predicted to enable calcium ion binding activity. Predicted to be involved in cell-cell adhesion. Predicted to act upstream of or within homophilic cell adhesion via plasma membrane adhesion molecules. Predicted to be located in plasma membrane.

GO:

id name namespace
GO:0098609 cell-cell adhesion biological_process
GO:0007155 cell adhesion biological_process
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-090313-82 Predicted to enable calcium ion binding activity. Predicted to be involved in cell-cell adhesion. Predicted to act upstream of or within homophilic cell adhesion via plasma membrane adhesion molecules. Predicted to be located in plasma membrane.

Ensembl:

ensembl_id ENSDARG00000095360

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00001167 True 2443 mRNA 0.44 17 53515089 53535565

Neighbor

gene id symbol gene type direction distance location
XLOC_000692 NA coding upstream 4466 53508505 ~ 53510623 (+)
XLOC_000691 NA coding upstream 23784 53490099 ~ 53491305 (+)
XLOC_000690 ucp1 coding upstream 126175 53374454 ~ 53388914 (+)
XLOC_000689 AL935166.1 coding upstream 147055 53364510 ~ 53368034 (+)
XLOC_000688 tbc1d9 coding upstream 153981 53321878 ~ 53361108 (+)
XLOC_000694 NA coding downstream 120666 53656231 ~ 53658289 (+)
XLOC_000695 NA coding downstream 153412 53688977 ~ 53695555 (+)
XLOC_000696 pus10 coding downstream 179169 53714734 ~ 53730536 (+)
XLOC_000697 NA coding downstream 225232 53760797 ~ 53770739 (+)
XLOC_000698 ifngr1 coding downstream 306779 53842344 ~ 53863308 (+)
XLOC_000687 NA non-coding upstream 193751 53320931 ~ 53321338 (+)
XLOC_000686 NA non-coding upstream 194415 53320159 ~ 53320674 (+)
XLOC_000699 NA non-coding downstream 328963 53864528 ~ 53865837 (+)
XLOC_000703 NA non-coding downstream 447049 53982614 ~ 53988776 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000302_00802180_00830802 NA coding CI01000302 null 802180 ~ 830832 (+)