CI01000004_03550525_03552621 (PTGER4C)


Basic Information

Item Value
gene id CI01000004_03550525_03552621
gene name PTGER4C
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 3550329 ~ 3553423 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_03550525_03552621.mRNA
CTATAAAAGCAGTGACACCTTTAAGTCCAATCAAGGCCACAGAGAGATTCGAGGAAACTTAAGAGGAAAAGAGATCTGTTCGTTTTTTATTTAGTGAACTCTCTGTATGTGCAGTGGATGCACACTGTACTTATGGAAAAACAAAGTGTACACTTTTTAGTTTGTGGAGCCACTCGCACCTGTTAACCTGTCAGACATGAATGATTCACTGAATTTCAATGTCACAGAAGTGCGCCTCGACTATCGCTCTCTCATCACTTCGGCCACTATGTTTGGCGTCGGAGTCCTCGGAAACCTCGTGGCGATCGTGGTGCTTTGCATCTCCAAGAAGGAGCAGAAGGAGACCACCTTTTACACTCTGGTGTGCGGGATGGCCATCACGGACCTGCTGGGCACCTGTTTCACCAGTCCGGTGGTCATCGCCACATATATCGCGGGAAGGTGGCCGGGCGGAGCGCTCCTATGCCATTTCTTCTCCTTCTCCATGCTGTTCTTCGGCTCGGCTGGGATGTCTATTCTGTGCGCCATGTCAGTGGAGAGATATCTGGCCATAAACCACGCGTACTTCTACTCTCAGCATGTGGACAGAGCCATGGCTCGGTTCGCGCTGATGGCGACGTATCTGGCCAATATCGTGTTGTGCATCATGCCCAGTTTTGGTTTCGGAAAACACAAGAGACACTTTCCCGGAACTTGGTGCTTCTTGGACTGGCGCGCCATGGACCCCGTTGGCGCATCGTACACGTTTCTGTACGGAGGTTTCATGCTGCTGTTGATCGCCATCACCGTCCTGTGTAATTTCGCTGTGTGCCGTTCTCTGGTCGGGATGAGTAAAATGAGTCGCATGGTGAGGGCAGAGGTATCCGGGCACACAGGGTCCAGGCGCAGATTCAAATTAACATCTGCAGCGGAGATCCAGATGTTCTGGTTGTTAATTTTCATGACCATCGTGTTCCTGATATGCTCCATTCCTTTAGTGGTTCGGATTTTTGTCAACCAGCTGTACGATCCTGCTTACATATCATCAGGCAAAAGTCCAGACTATCGCAGTGATCTTCTGGCTATTAGATTTGCCTCCTTCAACCCTATCCTGGACCCATGGGTGTATATTCTGTGCAGGAAAAACTTATTAACCAAAGGTTGCATGCAACTCAAACGTATTATTGGCCTGAGGAAAGGGGATCATAGTCATGTTTTGGGTTGGATGGATGGTCAGCACTCACCTCCGTCATTTGCGCAAAGCAATTGCACAAGTTATGCATCCTTGCGCACAGCCATCTGTAGAAACGACGTGGGTAAACAGACCTGCACGAACACTAAGTCTTATGTGGACTTAACCCTTCGCCAGGCATGGGACTTTGATACAGCCCTGGCTGAGTTTCATCCATTCAGCGTCGAGCAGAACGGTGTCATGGGTTTTGATGAAGATGAAGGAGCATCAAGCCCCAAAATCCTCACCAAGACTGTTGTAGCACTACCAGCCACTGAAATATTAGAAAATAAAGCTGAAATAGTGACCTGCACTTTCAGTACACCAAGTTCATGTTTATCAGAAAAGTGCATGAGACAATGATGCCAGTAGAGATTCATTCTGTAAAGCACTGAGAAAAAAAGACTTTTTCTCTTTTCTGTTATTTTACATTCACAAGAAATTCTGTGAATTTGCTTAATTTTGATTCCGAATGATCCTGATTTTAGGATTAAACCATGACGCTTGTATATCTATGTTTTGTTAGATGACATGGATGTGTTTGATATGTGGTTATGGATATGCTGTTTCCTACTGTGCTGTGCCATGTTGCATGATGGGTTGTACTTGAACTGTGACTTGTAAAACTGTGAATAATTTATTAAAGGTGCAATTTATTTTCATCATATGCAAGAGTACAACTGACCAACAAACTAAAATAATTCAGCAATCCTAAAACAATCTAAAAAATGAAATGCTTATATCGTAAAAAGCTAAAATCATAGTCTTTCAGATAAAATGATTAAAAGAATTTCATTCAACACAAAAGGACCATGTATCTAATGACAGTATGCTGCAGTATTAACTATAGTGAACTGATAAACTGTAATAAATACTGTAGTGTACTTTAGTTTTTACTACAGTAAACTGTAGTGTATTGTAGTATAATAGTTGTAGGAAACTCAGTACAGTATTGGGTAAAGTAATTTGCTTATATTACTATAGTTATATTACCACAGCAACTATAGAATTACCACAACAAATTAATTCAAGTACTTTACTATAGTATGGTTAAAAAACACTATAGTAGCCTATTTACTATAAATTACTATAGTATTTTGTCATGTTCATAAATAGCATATCTGCTTATCAATCTGTCATCTCTGAACATACAATATGCAATGCA
>TU29692
TGGACCCCGTTGGCGCATCGTACACGTTTCTGTACGGAGGTTTCATGCTGCTGTTGATCGCCATCACCGTCCTGTGTAATTTCGCTGTGTGCCGTTCTCTGGTCGGGATGAGTAAAATGAGTCGCATGGTGAGGGCAGAGGTATCCGGGCACACAGGGTCCAGGCGCAGATTCAAATTAACATCTGCAGCGGAGATCCAGATGTTCTGGTTGTTAATTTTCATGACCATCGTGTTCCTGATATGCTCCATTCCTTTAGTGGTTCGGATTTTTGTCAACCAGCTGTACGATCCTGCTTACATATCATCAGGCAAAAGTCCAGACTATCGCAGTGATCTTCTGGCTATTAGATTTGCCTCCTTCAACCCTATCCTGGACCCATGGGTGTATATTCTGTGCAGGAAAAACTTATTAACCAAAGGTTGCATGCAACTCAAACGTATTATTGGCCTGAGGAAAGGGGATCATAGTCATGTTTTGGGTTGGATGGATGGTCAGCACTCACCTCCGTCATTTGCGCAAAGCAATTGCACAAGTTATGCATCCTTGCGCACAGCCATCTGTAGAAACGACGTGGGTAAACAGACCTGCACGAACACTAAGTCTTATGTGGACTTAACCCTTCGCCAGGCATGGGACTTTGATACAGCCCTGGCTGAGTTTCATCCATTCAGCGTCGA

Function

symbol description
ptger4c Enables prostaglandin E receptor activity. Predicted to be involved in several processes, including adenylate cyclase-activating G protein-coupled receptor signaling pathway; cellular response to prostaglandin E stimulus; and positive regulation of cytosolic calcium ion concentration. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in brain; intestine; and ovarian follicle stage III. Human ortholog(s) of this gene implicated in ankylosing spondylitis; arteriosclerosis; and ulcerative colitis. Orthologous to human PTGER4 (prostaglandin E receptor 4).

NR:

description
unnamed protein product, partial

GO:

id name namespace
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG:

id description
K04261 PTGER4; prostaglandin E receptor 4

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_03550525_03552621.mRNA False 2375 mRNA 0.42 2 3550329 3553423
TU29692 True 679 TUCP 0.48 2 3551048 3552446

Neighbor

gene id symbol gene type direction distance location
CI01000004_03504401_03504700 NA coding upstream 45397 3504278 ~ 3504932 (+)
CI01000004_03496175_03497985 DMBX1, DMBX1A coding upstream 51945 3494746 ~ 3498384 (+)
CI01000004_03432787_03433110 NA coding upstream 116875 3432787 ~ 3433454 (+)
CI01000004_03426800_03430289 GBG12, GNG12, GNG12.L, GNG12A coding upstream 119908 3425462 ~ 3431535 (+)
CI01000004_03415537_03416073 NA coding upstream 134131 3415042 ~ 3416198 (+)
CI01000004_03592655_03592917 NA coding downstream 39232 3592655 ~ 3592917 (+)
CI01000004_03735876_03736152 NA coding downstream 182331 3735754 ~ 3737017 (+)
CI01000004_03814120_03839793 NA coding downstream 260628 3814051 ~ 3839807 (+)
CI01000004_03878083_03909016 NA coding downstream 324596 3878019 ~ 3909309 (+)
CI01000004_03934726_03935639 NA coding downstream 380262 3933685 ~ 3935870 (+)
G26199 NA non-coding upstream 240298 3309796 ~ 3310031 (+)
G26187 NA non-coding upstream 262349 3287606 ~ 3287980 (+)
G26186 NA non-coding upstream 264167 3285826 ~ 3286162 (+)
G26185 NA non-coding upstream 267165 3282904 ~ 3283164 (+)
G26317 NA non-coding downstream 29121 3582544 ~ 3582765 (+)
G26276 NA non-coding downstream 32362 3585785 ~ 3586457 (+)
G26233 NA non-coding downstream 33412 3586835 ~ 3589187 (+)
G26349 NA non-coding downstream 102390 3655813 ~ 3656027 (+)
G26354 NA non-coding downstream 113509 3666932 ~ 3667212 (+)
G26245 NA other upstream 27936 3509017 ~ 3522393 (+)
CI01000004_02745885_02768971 NA other upstream 791391 2745885 ~ 2769135 (+)
G25992 NA other upstream 813561 2736536 ~ 2736768 (+)
G25882 NA other upstream 977280 2548075 ~ 2573049 (+)
G25329 NA other upstream 1464622 2083057 ~ 2085707 (+)
G27805 NA other downstream 1819402 5372825 ~ 5373803 (+)
G28165 NA other downstream 2179166 5732589 ~ 5733001 (+)
G28302 NA other downstream 2916605 6470028 ~ 6502087 (+)
CI01000004_06571261_06572539 SEP15 other downstream 3017797 6570771 ~ 6572667 (+)
CI01000004_07654234_07655677 MRPL34 other downstream 4101349 7654234 ~ 7656383 (+)

Expression


Co-expression Network