tle2c (zgc:136336,LOC107713694,LOC107729985,LOC107558285,LOC107600240)


Basic Information

Item Value
gene id tle2c
gene name zgc:136336,LOC107713694,LOC107729985,LOC107558285,LOC107600240
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_025048446.1
NCBI id JAEQBD010000791.1
chromosome length 1202875
location 1026889 ~ 1046964 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043233530.1
GCGCTGTTTATGTTCCTCTGATCTCCGACGCGCGCTCGTCGTGCACGCGCCCCGCACAGGATGATCTTGTTACATTGTAGCGCGCCGTAACTGTGCGTCATAAAGAGGAAGAGCGTTTGATCCTGGCGAATAGAACGTTTTTAAACTTTTCATCGGATAGCTTGTAATTCTTCGGCTGCTCGGGAACGTTCGGAGCGCGGAAGAGCGAAGCTGATTTCCGCAGCGGACGCGGGGGGGTTCGGTGTCGGTCCTGACCATCGAGATCCCCGTGGATGACCTCCAGAAGCATGTATCCGCACGGAAGACCCCAGGCTCCGCTGGTGTCAGGCCACGCCGGCATGAAATTCACAGTCCTGGAAACTCTGGACCATATAAAAGAGGAATTCCAGCTGTTCCAGGCCCAGTATCACAGtctGAAGCTGGAATGTGAGAAGTTGGCGAGTGAGAAAACAGAGATGCACAGACATTATATCATGTATTATGAAATGTCTTACGGGCTGAACATCGAAATGCAGAAGCAGGCAGAGATTGTAAAGCGGCTCAGTGCTATATGCACTCAGATCATTCCACTGCTATCCCAAGAGcatCAGCATCAGGTGGCTCAAGCGGTGGAAAGATCCAAACATGTTAGCATGGCCGAGCTCAACGCTATCATAGGGCAGCAGCAGTTCCAGCATCTATCCCATCATGCCCCGGGCTTCCCTCTGACGCCACACCCCTCAGGTCTGACCCTGGGAGCGGGTGCGAGCCTCATGGCTCTTCCCGGGGCCTTCCCGTTTCCCCCACACCTGGCGCCTAAAGATGACCTCACTCATGCCGAGCCGCTGGACTCCAGAGATGGAGCTCCAAACAGGagcgGCAGCGGCTCTCCGGTGGGTCATCGGTCTGCGGGGCTGCGTCTgagtcttcctcctcctccctcttcctcttcctcatcctctcaCACCGACATGGACAATAAACGGGGCGGCGCGGACCCGAGCGGCACGGGACGAACACGGCGGGAAAGTGGCGGTAAAAATGAAGACACACTCAGAAGAGACAGCAATAAAGAGAAAAGTGTGTCCCCCGCAGGAGTCTCTCCCAGATCGACGGAAGGGAACGGACTGAACAGCTCTCCGGTGCTCCGGAAGAATCCGTCCAGAGAAGGCTCTTCCTCGCCTCGCTCTCAGCCTCGCTCACCTCTCTGCAAGAGCCCCGCTCAGGAGAAAGTGAGATCTCCGTCTCCTTCAGCGTCCCATGAATCACTCTCTCCTGGCTCTCCAGCACCTCCCCGTCCTCTCTCGTCCTCCGCCCGCGGCCCGTCTCCCGCTCTCAAACACTAGGACCCACTCCAGCCCATGGAGTGAGACTAGTGAAAGACTGCCGCTACCCCTCCCCAGCCCGCCCTTCCCAGAATGCACGGGGCCGGTCCCAGAATGCACCGGGGCAGCCCCAGAGCGCTCGGGCCTGGGCATCAGGTGCCTTGTCAGGAGCCCTTCATCTGTCCTCGTGGCCCTTCGAGCCGAACTCTGAGCGAACCGCATCTGTGTTCTCACAAACAGGGCgtaatcagccaatcagctgtCTGGCAGCTCTGTCAGCCAATTAGAAAGAAAGCTGAATATTCTGcGTGACGGGCAAATGGAGGCAAGATACGGGCGTCTCCGTATCGTCTCCCACGCAGAAAAGGACTGAGATGCTTTTACTGCCAATTTTATGTCGAAACGAGTTCGAAACAGAAGCGCGGAAAACTTCCAGACAAATGGACACGGAGGCGTTCCTGTTCTTCCTCCCCCAGAGCTTTGAAGTGTGTCGGCGAAGAGCTGGGTTCGCCCCGGAGCCGTCGCGCCGTTTCCCCCTCACCGAAGCAGACTTTAATAAAACTGTCCTTTTGAGCGCCTAGCGTTAGTTCCGCGCAAGTATCCGAAGAGAAACGATGCAGTTTTCGCTTGTAATAAACAGGCCTCTGTCGCTCACGTATGAATGCTCACTTTATGATGCTAAACGAAGCAATGAAGCGCGAGAGCCTGCGCTGTGTCGTGAATTAAATCAAAAAGGACGGCGTCGGGGCGCTTTTTATTCACAACGCAGCACAATCTCGAGCGCTTTATTGCGTTTTAAAATGCTTGATATTAAGTACAAGGCGTTtgattaaaatatcattttgttaAACAGC
>XM_043233531.1
AGGTCAGCGCTGTTTATGTTCCTCTGATCTCCGACGCGCGCTCGTCGTGCACGCGCCCCGCACAGGATGATCTTGTTACATTGTAGCGCGCCGTAACTGTGCGTCATAAAGAGGAAGAGCGTTTGATCCTGGCGAATAGAACGTTTTTAAACTTTTCATCGGATAGCTTGTAATTCTTCGGCTGCTCGGGAACGTTCGGAGCGCGGAAGAGCGAAGCTGATTTCCGCAGCGGACGCGGGGGGGTTCGGTGTCGGTCCTGACCATCGAGATCCCCGTGGATGACCTCCAGAAGCATGTATCCGCACGGAAGACCCCAGGCTCCGCTGGTGTCAGGCCACGCCGGCATGAAATTCACAGTCCTGGAAACTCTGGACCATATAAAAGAGGAATTCCAGCTGTTCCAGGCCCAGTATCACAGtctGAAGCTGGAATGTGAGAAGTTGGCGAGTGAGAAAACAGAGATGCACAGACATTATATCATGTATTATGAAATGTCTTACGGGCTGAACATCGAAATGCAGAAGCAGGCAGAGATTGTAAAGCGGCTCAGTGCTATATGCACTCAGATCATTCCACTGCTATCCCAAGAGcatCAGCATCAGGTGGCTCAAGCGGTGGAAAGATCCAAACATGTTAGCATGGCCGAGCTCAACGCTATCATAGGGCAGCAGTTCCAGCATCTATCCCATCATGCCCCGGGCTTCCCTCTGACGCCACACCCCTCAGGTCTGACCCTGGGAGCGGGTGCGAGCCTCATGGCTCTTCCCGGGGCCTTCCCGTTTCCCCCACACCTGGCGCCTAAAGATGACCTCACTCATGCCGAGCCGCTGGACTCCAGAGATGGAGCTCCAAACAGGagcgGCAGCGGCTCTCCGGTGGGTCATCGGTCTGCGGGGCTGCGTCTgagtcttcctcctcctccctcttcctcttcctcatcctctcaCACCGACATGGACAATAAACGGGGCGGCGCGGACCCGAGCGGCACGGGACGAACACGGCGGGAAAGTGGCGGTAAAAATGAAGACACACTCAGAAGAGACAGCAATAAAGAGAAAAGTGTGTCCCCCGCAGGAGTCTCTCCCAGATCGACGGAAGGGAACGGACTGAACAGCTCTCCGGTGCTCCGGAAGAATCCGTCCAGAGAAGGCTCTTCCTCGCCTCGCTCTCAGCCTCGCTCACCTCTCTGCAAGAGCCCCGCTCAGGAGAAAGTGAGATCTCCGTCTCCTTCAGCGTCCCATGAATCACTCTCTCCTGGCTCTCCAGCACCTCCCCGTCCTCTCTCGTCCTCCGCCCGCGGCCCGTCTCCCGCTCTCAAACACTAGGACCCACTCCAGCCCATGGAGTGAGACTAGTGAAAGACTGCCGCTACCCCTCCCCAGCCCGCCCTTCCCAGAATGCACGGGGCCGGTCCCAGAATGCACCGGGGCAGCCCCAGAGCGCTCGGGCCTGGGCATCAGGTGCCTTGTCAGGAGCCCTTCATCTGTCCTCGTGGCCCTTCGAGCCGAACTCTGAGCGAACCGCATCTGTGTTCTCACAAACAGGGCgtaatcagccaatcagctgtCTGGCAGCTCTGTCAGCCAATTAGAAAGAAAGCTGAATATTCTGcGTGACGGGCAAATGGAGGCAAGATACGGGCGTCTCCGTATCGTCTCCCACGCAGAAAAGGACTGAGATGCTTTTACTGCCAATTTTATGTCGAAACGAGTTCGAAACAGAAGCGCGGAAAACTTCCAGACAAATGGACACGGAGGCGTTCCTGTTCTTCCTCCCCCAGAGCTTTGAAGTGTGTCGGCGAAGAGCTGGGTTCGCCCCGGAGCCGTCGCGCCGTTTCCCCCTCACCGAAGCAGACTTTAATAAAACTGTCCTTTTGAGCGCCTAGCGTTAGTTCCGCGCAAGTATCCGAAGAGAAACGATGCAGTTTTCGCTTGTAATAAACAGGCCTCTGTCGCTCACGTATGAATGCTCACTTTATGATGCTAAACGAAGCAATGAAGCGCGAGAGCCTGCGCTGTGTCGTGAATTAAATCAAAAAGGACGGCGTCGGGGCGCTTTTTATTCACAACGCAGCACAATCTCGAGCGCTTTATTGCGTTTTAAAATGCTTGATATTAAGTACAAGGCGTTtgattaaaatatcattttgttaAACAGC
>XM_043233532.1
TATGTTCCTCTGATCTCCGACGCGCGCTCGTCGTGCACGCGCCCCGCACAGGATGATCTTGTTACATTGTAGCGCGCCGTAACTGTGCGTCATAAAGAGGAAGAGCGTTTGATCCTGGCGAATAGAACGTTTTTAAACTTTTCATCGGATAGCTTGTAATTCTTCGGCTGCTCGGGAACGTTCGGAGCGCGGAAGAGCGAAGCTGATTTCCGCAGCGGACGCGGGGGGGTTCGGTGTCGGTCCTGACCATCGAGATCCCCGTGGATGACCTCCAGAAGCATGTATCCGCACGGAAGACCCCAGGCAGAGATTGTAAAGCGGCTCAGTGCTATATGCACTCAGATCATTCCACTGCTATCCCAAGAGcatCAGCATCAGGTGGCTCAAGCGGTGGAAAGATCCAAACATGTTAGCATGGCCGAGCTCAACGCTATCATAGGGCAGCAGCAGTTCCAGCATCTATCCCATCATGCCCCGGGCTTCCCTCTGACGCCACACCCCTCAGGTCTGACCCTGGGAGCGGGTGCGAGCCTCATGGCTCTTCCCGGGGCCTTCCCGTTTCCCCCACACCTGGCGCCTAAAGATGACCTCACTCATGCCGAGCCGCTGGACTCCAGAGATGGAGCTCCAAACAGGagcgGCAGCGGCTCTCCGGTGGGTCATCGGTCTGCGGGGCTGCGTCTgagtcttcctcctcctccctcttcctcttcctcatcctctcaCACCGACATGGACAATAAACGGGGCGGCGCGGACCCGAGCGGCACGGGACGAACACGGCGGGAAAGTGGCGGTAAAAATGAAGACACACTCAGAAGAGACAGCAATAAAGAGAAAAGTGTGTCCCCCGCAGGAGTCTCTCCCAGATCGACGGAAGGGAACGGACTGAACAGCTCTCCGGTGCTCCGGAAGAATCCGTCCAGAGAAGGCTCTTCCTCGCCTCGCTCTCAGCCTCGCTCACCTCTCTGCAAGAGCCCCGCTCAGGAGAAAGTGAGATCTCCGTCTCCTTCAGCGTCCCATGAATCACTCTCTCCTGGCTCTCCAGCACCTCCCCGTCCTCTCTCGTCCTCCGCCCGCGGCCCGTCTCCCGCTCTCAAACACTAGGACCCACTCCAGCCCATGGAGTGAGACTAGTGAAAGACTGCCGCTACCCCTCCCCAGCCCGCCCTTCCCAGAATGCACGGGGCCGGTCCCAGAATGCACCGGGGCAGCCCCAGAGCGCTCGGGCCTGGGCATCAGGTGCCTTGTCAGGAGCCCTTCATCTGTCCTCGTGGCCCTTCGAGCCGAACTCTGAGCGAACCGCATCTGTGTTCTCACAAACAGGGCgtaatcagccaatcagctgtCTGGCAGCTCTGTCAGCCAATTAGAAAGAAAGCTGAATATTCTGcGTGACGGGCAAATGGAGGCAAGATACGGGCGTCTCCGTATCGTCTCCCACGCAGAAAAGGACTGAGATGCTTTTACTGCCAATTTTATGTCGAAACGAGTTCGAAACAGAAGCGCGGAAAACTTCCAGACAAATGGACACGGAGGCGTTCCTGTTCTTCCTCCCCCAGAGCTTTGAAGTGTGTCGGCGAAGAGCTGGGTTCGCCCCGGAGCCGTCGCGCCGTTTCCCCCTCACCGAAGCAGACTTTAATAAAACTGTCCTTTTGAGCGCCTAGCGTTAGTTCCGCGCAAGTATCCGAAGAGAAACGATGCAGTTTTCGCTTGTAATAAACAGGCCTCTGTCGCTCACGTATGAATGCTCACTTTATGATGCTAAACGAAGCAATGAAGCGCGAGAGCCTGCGCTGTGTCGTGAATTAAATCAAAAAGGACGGCGTCGGGGCGCTTTTTATTCACAACGCAGCACAATCTCGAGCGCTTTATTGCGTTTTAAAATGCTTGATATTAAGTACAAGGCGTTtgattaaaatatcattttgttaAACAGC

Function

NR:

description
PREDICTED: transducin-like enhancer protein 1 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043233530.1 False 2158 mRNA 0.55 14 1026895 1046964
XM_043233531.1 True 2161 mRNA 0.55 14 1026889 1046964
XM_043233532.1 False 1940 mRNA 0.56 11 1026903 1046964

Neighbor

gene id symbol gene type direction distance location
gna11b gna11b,LOC103033252,LOC107600186,LOC108427217,LOC107667855,LOC107696027,LOC108280682,LOC107558284,LOC105889474,LOC107750923 coding upstream 19468 974573 ~ 1007421 (+)
LOC122335651 LOC568754,LOC107558277,LOC107667866,LOC107600185,LOC107729992,LOC107750900,LOC107696035,LOC108427118 coding upstream 98700 920957 ~ 928189 (+)
ralbp1 ralbp1,LOC107696059,LOC107667860 coding upstream 119841 894128 ~ 907048 (+)
hsd11b1lb LOC107596225,LOC107729988,LOC107667865,LOC107750927 coding upstream 358698 662618 ~ 668191 (+)
zmp:0000000521 zmp:0000000521,LOC107696078,LOC107596226,LOC108442439,LOC108280721,LOC105888700 coding upstream 364985 652741 ~ 661904 (+)
scn12aa scn12aa,LOC107655859,LOC108427209,LOC107713684 coding downstream 77120 1124084 ~ 1175611 (+)
LOC122335692 NA non-coding upstream 81364 937018 ~ 945525 (+)
G190353 rxfp3.2a,LOC107729970,LOC107600262,LOC107696777,LOC107750939,LOC107667854,LOC107558276 non-coding upstream 161926 862415 ~ 864963 (+)
G190350 NA non-coding upstream 167355 859310 ~ 859534 (+)
LOC122335698 NA non-coding upstream 174137 845940 ~ 852752 (+)
G190314 LOC107569623,LOC107696073,LOC107750904,LOC108280171,LOC108444550,LOC107667861 non-coding upstream 317425 703536 ~ 709464 (+)
G190367 NA non-coding downstream 2386 1049350 ~ 1053122 (+)
G190443 NA non-coding downstream 133857 1180821 ~ 1181264 (+)
G190445 NA non-coding downstream 134498 1181462 ~ 1181721 (+)
G190447 NA non-coding downstream 135282 1182246 ~ 1182740 (+)
G190449 NA non-coding downstream 136810 1183774 ~ 1184048 (+)
chico chico,LOC107558286,LOC107696010,LOC107667856,LOC107600187,LOC107713638 other upstream 4008 1008150 ~ 1022881 (+)
rab31 rab31,LOC107667863,LOC107696047,LOC107750901 other upstream 112822 906262 ~ 914067 (+)
sirt6 sirt6,LOC107600234,LOC107696599,LOC107596265,LOC107667852 other upstream 190211 817333 ~ 836678 (+)
G190175 mtcl1,LOC107596231,LOC107569627,LOC107754603,LOC107696625 other upstream 679735 338941 ~ 347154 (+)
LOC122335676 rab8a,LOC107687930,LOC107696202 other upstream 1006516 13786 ~ 20373 (+)

Expression


Co-expression Network