CI01000004_05154049_05203177 (COL11A1B, COL11A1)


Basic Information

Item Value
gene id CI01000004_05154049_05203177
gene name COL11A1B, COL11A1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 5154049 ~ 5203177 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_05154049_05203177.mRNA
TGGCACCGCGTGGCTATTAGCATCGAAAAGAAGACCGTCACAATGATTGTGGACTGTAAGAAGAAGATCTCTAAACCACTCAGCAGAAGTGACCACGCAATCATTAACACAGATGGCATCTCTGTCTTCGGCACCAGAATCCTGGACGAGGAAGTTTTTGAGGCAAGCAAAGCTGGGGACATCCAGCAGCTTCTTTTGGTGGCAGACCCTCGTGCAGCCTACGACTACTGTGAACACTACAGCCCTGACTGTGAAACCCCCCACCAGGACACACCACAGGCCCAGGAACCTGAGGAGGAGTATACTGAATACACAGATTATAATGAGTTCTATGACTACACAGAGGAAGTGACTGCCACTGAAAATCCCACTGACAACGTCTATACTGAGACCAAGCCCAGCACTGCTGAAACGGGCGACTATTATGTTGAGCAGGACTATGCCACTGAAGCCCCTTCCATTTCCATTCCAGCCAAAGAGAATCCTTTGCCAAAAGAGGAAATAGTAGACGACTACGTTACAGGGATAGAAGAAGTTGGAGTGGATCCCACCATTGCCACCAACGAGAATGTGGAAATTGTGGAGTCCAAAAACACTAATGCCGCCGAAACCCAGGACTTTAAAGAATACGACATTAACGAATATGATGGAAAAGAGTTAGATCCCAGCAATTATGACGATACATTCTATGAATACAATACTAATACTAATGGAGGCAATCCCACTGGATCAACCTATGAGGAGGAGTTCGGACCAGGCCGGCCTGCTGAAACGGAGGTCACAGAGAGTAATGTTGGTGGTGGCTATGGTGGTGAGAAGGGGCAAAAAGGTGAACCTGCAGTCATTGAGCCGGGGATGCTTGTAGAGGGACCTCCAGGACCACCAGGGCCCGCCGGCCTCCCTGGCACTCCAGGCATACAAGGCTCTCCGGGCCTCCACGGAGATCCTGGTGAAAGAGGTCCTCCTGGTCGTCCGGGTTTGCCAGGCGCAGATGGAGCTCCGGGGCCCTCTGGCACTATCCTCATGTTGCCTTTCCGCGCTGGTGGAGAATCTTCAAAAGGTCCAGTGGTGACGGCACAAGAAGCTCAGGCCCAAGCCATCCTTGCCCAGGCCCGGGTGTGTGTGAGACATAAAACTCATCTGTGTATGTGTGTGTTTCAGGGTGGTCCTGGTGCACCTGGTGCTAAAGGGGAAAGTGGAGATTCTGGCCCACAGGGACCAAGAGGACTTCAAGGCCCTACTGGATCACCTGGAAAACCAGGCAAGAGGGGCCGAAATGGAGCCGACGGAGCCAGAGGAATTCCTGGAGAATCAGGAGCCAAGGGGGACCGAGGATTTGATGGGCTTCCTGGCTTACCTGGTGAGAAGGGACACAGAGGTGAGACAGGTCCCATCGGCCTACCAGGCCCTCCAGGAGAGGATGGACCAAGGGGTGAGGATGGTGAGATCGGACAGAGGGGAATGCCAGGAGAAAGTGGTCCAAGAGGACTGCTGGGCCCCAGAGGATCTCCTGGTACCGCTGGACAGCGTGGTCTTCCTGGATTGGATGGACCACCTGGCCCTAAAGGAAATATGGGTCCTCAAGGAGAGCCTGGACCCCCTGGGCAACAGGGTAACACTGGTCCACATGGTCTGCCTGGTCCTCAAGGCCCGATTGGTCCACCTGGAGAGAAAGGTCCTGGTGGAAAACAGGGGCTCCATGGGCTGGCTGGGGCTGATGGGCCTCCTGGTCATCCTGGGAAAGAGGGTCCTCCCGGGGAGAAAGGAGCAGCTGGCCACCCAGGTCCCCAGGGTTCCATTGGTTATCCCGGCCCCCGAGGTGTGAAGGGTGCCGAGGGTGTTCGTGGCTTGAAGGGCGGCAAAGGCGAGAAGGGAGAAGATGGTTTTCCTGGGTTCAAGGGCGACATGGGCCTCAAGGGTGACAAGGGAGAGGGTGGTGTTTTGGGCCCCAGAGGAGAAGACGGACCAGAGGGGCCCAAAGGTAAATCAGGTCCCACCGGAGAGGCTGGTCCTATGGGCACGGCAGGAGAGAAGGGAAAACTTGGTGTTCCAGGTTTGCCTGGATACCCGGGAAGACAAGGTCCTAAGGGCTCTACTGGTTTCCCTGGCTTCCCTGGATCCAATGGTGAGAAGGGAGGAAGGGGTATCGCTGGTAAAGCGGGTCCAAGAGGACAAAGAGGTCCAACGGGACCCCGTGGTGGAAGAGGTGCCAGAGGTCCAACAGGAAAACCTGGACCAAAGGGAACATCAGGAAATGATGGACCATCTGGTGGCCCAGGAGAGAGAGGACCCCAAGGACCTCAGGGCCCTGTTGGATTACCAGGCCCTAAAGGCCCACCTGGGCCTGCTGGAAAGGACGGATTGCCTGGTCACCCTGGACAGCGAGGAGAGACTGGTTTTCAAGGAAAGACTGGACCTCCAGGACCTGGAGGTGTTGTTGGCCCACAGGGCTCTACTGGAGAAACTGGTCCTGTTGGAGAGAGAGGACATCCTGGATCTCCAGGGCCCCCTGGAGAGCAAGGTCTTCCCGGAGCTGCTGGCAAAGAAGGTGGAAAGGGTGATCCAGGTCCTCAGGGGATTTCTGGGAAACCTGGCCCTGCCGGATTGAAAGGGTTCCCAGGACAAAGGGGGCTTCCTGGCGCAGCGGGTCCATCTGGTCTGAAGGGAGGCGAGGGTCCACAGGGCCCACCTGGCCCC

Function

symbol description
col11a1b Predicted to be an extracellular matrix structural constituent. Predicted to be involved in extracellular matrix organization. Predicted to be located in extracellular region. Predicted to be part of collagen type XI trimer. Predicted to be active in extracellular matrix and extracellular space. Is expressed in several structures, including cranial cartilage; nervous system; neural crest; notochord; and otic vesicle. Human ortholog(s) of this gene implicated in Marshall syndrome; Stickler syndrome 2; autosomal dominant nonsyndromic deafness; and fibrochondrogenesis 1. Orthologous to human COL11A1 (collagen type XI alpha 1 chain).
col11a1 Predicted to be an extracellular matrix structural constituent. Involved in detection of mechanical stimulus involved in sensory perception of sound; endodermal cell differentiation; and visual perception. Located in collagen-containing extracellular matrix. Part of collagen type XI trimer. Implicated in Marshall syndrome; Stickler syndrome 2; autosomal dominant nonsyndromic deafness; and fibrochondrogenesis 1.

NR:

description
collagen type XI alpha-1a

GO:

id name namespace
GO:0005201 extracellular matrix structural constituent molecular_function

KEGG:

id description
K19721 COL5AS; collagen type V/XI/XXIV/XXVII, alpha

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_05154049_05203177.mRNA True 2697 mRNA 0.56 37 5154049 5203177

Neighbor

gene id symbol gene type direction distance location
CI01000004_04924543_04956339 VAV3B coding upstream 197614 4924508 ~ 4956435 (+)
CI01000004_04798717_04889650 ARHGEF4 coding upstream 264399 4798717 ~ 4889650 (+)
CI01000004_04786239_04788953 NA coding upstream 365088 4786239 ~ 4788961 (+)
CI01000004_04754556_04784656 ATR coding upstream 369292 4754556 ~ 4784757 (+)
CI01000004_04690908_04706755 ATP1B3A coding upstream 447149 4690908 ~ 4706900 (+)
CI01000004_05227614_05231253 OLFM3, OLFM3A, OLFM3B coding downstream 24437 5227614 ~ 5232052 (+)
CI01000004_05238552_05246750 TECRL2B coding downstream 34027 5237204 ~ 5247114 (+)
CI01000004_05343381_05353920 NA coding downstream 140204 5343381 ~ 5354231 (+)
CI01000004_05389431_05393230 TMEM56 coding downstream 186193 5389370 ~ 5394211 (+)
CI01000004_05397192_05402109 HCCSA.1, RWDD3 coding downstream 193918 5397095 ~ 5402109 (+)
G27388 NA non-coding upstream 20472 5133205 ~ 5133577 (+)
G27383 NA non-coding upstream 27551 5108262 ~ 5126498 (+)
G27148 NA non-coding upstream 37470 4991403 ~ 5116579 (+)
G27293 NA non-coding upstream 161028 4905159 ~ 4993021 (+)
G27295 NA non-coding upstream 253212 4895552 ~ 4900837 (+)
G27753 NA non-coding downstream 3671 5206848 ~ 5208660 (+)
G27757 NA non-coding downstream 16438 5219615 ~ 5220010 (+)
G27780 NA non-coding downstream 45657 5248834 ~ 5249065 (+)
G27782 NA non-coding downstream 50492 5253669 ~ 5254045 (+)
G27791 NA non-coding downstream 61647 5264824 ~ 5265316 (+)
CI01000004_03550525_03552621 PTGER4C other upstream 1601603 3550329 ~ 3553423 (+)
G26245 NA other upstream 1631656 3509017 ~ 3522393 (+)
CI01000004_02745885_02768971 NA other upstream 2395111 2745885 ~ 2769135 (+)
G25992 NA other upstream 2417281 2736536 ~ 2736768 (+)
G25882 NA other upstream 2581000 2548075 ~ 2573049 (+)
G27805 NA other downstream 169648 5372825 ~ 5373803 (+)
G28165 NA other downstream 529412 5732589 ~ 5733001 (+)
G28302 NA other downstream 1266851 6470028 ~ 6502087 (+)
CI01000004_06571261_06572539 SEP15 other downstream 1368043 6570771 ~ 6572667 (+)
CI01000004_07654234_07655677 MRPL34 other downstream 2451595 7654234 ~ 7656383 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_016257 col11a1b coding NC_007113.7 CM002886.2 15389193 ~ 15563194 (-)