CI01000004_05389431_05393230 (TMEM56)


Basic Information

Item Value
gene id CI01000004_05389431_05393230
gene name TMEM56
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 5389370 ~ 5394211 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_05389431_05393230.mRNA
ATATAAAATTACACTGGACAACTGCATACAAGAGAAAGCACTTTCTGAGTGAATATGGAGAATGGAGAGGCTGTTGGATTCTCTTCACAATCTCTCCACCAATTTCCCTTGTGAATGCCTGAGGCAAACACCTGAGCTTTACAGATCACCTAAACCCTGCATTTATCCACGTGTCCAGCTGTGTTCATGGCCAGTTCAACATGGGTCTTTCATAACAGAAAGGTGGGATTTGGCAGTAGAGAGGTACTGCGGCAGCTCAGGTGATGACTGGGGCTTTTATGATCGGAACCGGTCTGGAGGCTCAGCAGGCATGGAGCCTCTCAGCCTGCAGGTGCTGGTGGTTGTAACAGGGAGCTTCCTGGGCTTCCAGTGGCTGTTCCACAGAGGTAGCCCTTGGGTGTCTCAGCAACTCTGCAAAGGCTTCCTTAGGCTCAGCCCTACACAAAGGACGGAGTGGAACTCCAGGGCCGTCTCAACAGTGCACGCCTTGGTTGTGGGACTTTTCTGTCTCTACATATATATCTTTGATGAATTCATCCAGAAAGACCCAGTCTGGGGAGACGCCACACTGGTGAAACTAAACGTGGCCATTACCTCAGGTTATCTAATTTCAGATCTCCTGCTCATGTTTACTTCATGGGAGTCAATTGGAGAGAAATACTTTGTCATACATCATTTTGCTGCTCTCTATGCATACTACTATGTGCTGAGTCAAGGGATATTGCCTTACTTTGCTAATTTCCGTCTGCTCTCAGAATTCTCCACCCCCTTTGTCAACCAGCGTTGGTTTTTTCACATGTTGGGCTACCACAAACTCTCCAGACCGAGTTTGGTTAATGGTGTCACCATGGCATTTACATTCTTCTTGGTGAGGATCGCAGTCATTCCGGGCTACTACAGCCATATGTACTCAATCTTTGGCACAGATGACTTCTACAAGTTACCTCTGGGAGGCCGCAGTGCCTGGGTTATTTCTAGTGTGTCTTTGGATGTTATGAACATCATGTGGATGCGCAGAATCATCCGTGGATGTCTCAAAGTCCTTCACTCAGCCTGGTCGAGAAAAGCAGGAACTGAAATGGAAACTAGAAAGACAGACTGACGTGGAGATACAAATATAAACTGAACACATCAGCACACAAACTGTCCATCTTGTATCATGTCCAACCTGATGCTGGAGTGCAAATGCTGCTGTAATGCCATGACTTCAGTTTTGAGTTTTAAACTGACAAATCAAGAGCTTAGAAAGTCAGTCAATGTATTAATGACTTAAAAGATGTCATCTTCAAATATGGGCACAACTGGAGGAATTAAGTCACAAACAATCTTTCAGTTTAAAAAGAAAAATCAGGTGATTAAGAGGCAAGGGACTGATCACATGTACAATTAGGACAATAGTTGTGGTTGCACTATTTATTATAAAGCTGCTATTAAGATCAACCAACTTGCCTTTATGAATGCAATCAACAAAGCAACAGCACATCTGAACTTCCACAAAGATACACTGTGTGCCTGTAGACCACGATACACAACTTTTTTACTACAATATGGATAGGGTTGGGTATGCAGAGAAATATAATGGCCATTATAAATGTAGTGGAAATGGGTTAAATGAATAGGCGAAAGATCCTGCTTTTGCAGCTCAGCAGTGCAGGATATTGTACTCAAGAAACCATGCATGTCTGCATATAATTAATATAATTATTGCATATATGGAGAATACTATGTATGGAGAGTATTATATGTCTGGAATGGAAAACATATCAGGTGACACAATGTTATATAATATAAGTGCTTCTGAAAATCTATAACTTGATGCAGCAGTGTATAAGCTTTTTGCTTGTAGTATGTGGTTTGTGGGTTAGATTTGGAATAATGACAATTATAATATGTAAGCTTCAATAAGAAAAGGCTTTTCAGGTTACTTCACCGTTATGTAGGCCTATGCAGTTAAAAAAACGCAATAGGATTCTTGAAAAAGGTGTATGAGCTATTCCAACTGAATGAATACTGTGATGTCAAAAATACTTATGGAAGTGACTGGACATGTGTGTTTCTGTGGTGTGACAATGTTTTAATTTAA

Function

NR:

description
Si:dkey-10f21.4 protein

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_05389431_05393230.mRNA True 2083 mRNA 0.42 8 5389370 5394211

Neighbor

gene id symbol gene type direction distance location
CI01000004_05343381_05353920 NA coding upstream 35139 5343381 ~ 5354231 (+)
CI01000004_05238552_05246750 TECRL2B coding upstream 142256 5237204 ~ 5247114 (+)
CI01000004_05227614_05231253 OLFM3, OLFM3A, OLFM3B coding upstream 157318 5227614 ~ 5232052 (+)
CI01000004_05154049_05203177 COL11A1B, COL11A1 coding upstream 186193 5154049 ~ 5203177 (+)
CI01000004_04924543_04956339 VAV3B coding upstream 432935 4924508 ~ 4956435 (+)
CI01000004_05397192_05402109 HCCSA.1, RWDD3 coding downstream 2884 5397095 ~ 5402109 (+)
CI01000004_05454350_05455993 NA coding downstream 59630 5453841 ~ 5455993 (+)
CI01000004_05459139_05467673 PTBP2B, PTBP2 coding downstream 64928 5459139 ~ 5468857 (+)
CI01000004_05474127_05476501 NA coding downstream 78868 5473079 ~ 5476755 (+)
CI01000004_05735852_05752650 PLPPR4, PLPPR4A coding downstream 341587 5735798 ~ 5754011 (+)
G27836 NA non-coding upstream 19425 5369697 ~ 5369945 (+)
G27801 NA non-coding upstream 31514 5355151 ~ 5357856 (+)
G27794 NA non-coding upstream 113018 5276112 ~ 5276352 (+)
G27791 NA non-coding upstream 124054 5264824 ~ 5265316 (+)
G27782 NA non-coding upstream 135325 5253669 ~ 5254045 (+)
G27921 NA non-coding downstream 47153 5441364 ~ 5441713 (+)
G27943 NA non-coding downstream 84929 5479140 ~ 5479363 (+)
G27944 NA non-coding downstream 85324 5479535 ~ 5479749 (+)
G27924 NA non-coding downstream 87594 5481805 ~ 5581710 (+)
G28018 NA non-coding downstream 245520 5639731 ~ 5639932 (+)
G27805 NA other upstream 15567 5372825 ~ 5373803 (+)
CI01000004_03550525_03552621 PTGER4C other upstream 1836924 3550329 ~ 3553423 (+)
G26245 NA other upstream 1866977 3509017 ~ 3522393 (+)
CI01000004_02745885_02768971 NA other upstream 2630432 2745885 ~ 2769135 (+)
G25992 NA other upstream 2652602 2736536 ~ 2736768 (+)
G28165 NA other downstream 338378 5732589 ~ 5733001 (+)
G28302 NA other downstream 1075817 6470028 ~ 6502087 (+)
CI01000004_06571261_06572539 SEP15 other downstream 1177009 6570771 ~ 6572667 (+)
CI01000004_07654234_07655677 MRPL34 other downstream 2260561 7654234 ~ 7656383 (+)
CI01000004_08414451_08436256 NA other downstream 3039494 8414316 ~ 8439933 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location