CI01000004_05397192_05402109 (HCCSA.1, RWDD3)


Basic Information

Item Value
gene id CI01000004_05397192_05402109
gene name HCCSA.1, RWDD3
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 5397095 ~ 5402109 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_05397192_05402109.mRNA
CCATATATGACAGCAATATTATGCTAAATGTATAAGCCACTCAAAACTTACTGTGTCGTTTCATCTTTTTTTGTCTGGGAAGCTGATGGGAGACACTATGTCCAGCCCTACAGGCACTGTGAAGGCAGAGGGCATCATGGTGCCTGACTTTGGCAGCGCACCACCAAAGGGCTGTCCAATGCATCAAGATGTTAATAAAAGTGCCCCTCCGCCAGAATGTCCAATGCATCAGGGGTCTGCACCTGCTAGCGATCAGCTGAAGAAAGCGGCAGATGTACCAGCACATCAGGACAGGGCATATGAATTTGTAGAGTGTCCTATGAGAGCTGCTGACAGGGCTAAACCCACAATGTCTGACATCAATCCAGCAAACATGATGCCACCACCTAACCAGCAACCTTCAGCTGATCAACCGTTCCCGCTGTCTGTTGTAAGAGAGGAATCTACCATCCCTCGTGCTGGATCTGAGCAGAAATGGGTTTATCCCTCAGAGCAGATGTTCTGGAATGCCATGCTGAGAAAAGGATGGCGCTGGAACAATGATGATATCAAACAGAAAGATATGACAAACATCATCAGGATTCACAACCAGAATAATGAGCAAGCCTGGCAGGAAATCCTGAGATGGGAAAAGCTACATTCTAAAGAATGCCCATGTGGACCTTCTCTTCTAAGGTTTGGTGGCAAAGCAAAAGACTTTTCACCCAGAGCCAGATTTCGCCATTGGATGGGGCATGAGCTACCGTTTGACAGGCATGACTGGATTATTGACCGGTGTGGAAAAGATGTCAGATATGTGATAGACTACTATGATGGAGGCCAGACTGCAAAAATGTCAAAGGAAGCGTTTGATGAAATGTCAGTTTTATCCGCCATATACTGCGAGCAGGGCGAATTCGAGCTGTTAGAAGAGTCACCTGAGAGGGGAATTGTGTGCCGTATACATACACTGATAGAGAGGAACAGCGAGAAGACCCCGCTAGGCCTTATTTTCCACATCTCTCCTGACTACCCCCACACTCCTCCAGATATCAGCATCAGTTCCAGGCACTTATCGAGGAAACAGTGTCATGACCTGAGACAGCAATTACTGGACACAGCACGATCACTTCCACCAGAGCCCATGATCCATGGCTTAATGCTGTGGCTTCAGGATAACTTCTCTGACTTGATCAAAACATCAAGCTGTCATTCAGCAGAGGTCAGAGGAGAAACTACAGAAGAAACCTGGACCGCTTTACTACATTTAGATCACATGAGATCCAAAGCAAAATACATAAAACTGATTGAAAAATGGGCTTCAGAGCTGTGTCTCACTGGGAGACTCTTTATGGGCAAACCGATATTGATTCTGCTGCAAGGAACAAAGGAAAATATTAAAGAATACATCCACCTTCAGAAGACTGTAAAAGTTGATGTTGATTCTTCAGGGAAACGCTGTAAGGAAAAGATGATGAGTGTCCTTTGTGAGATTCCACAACCAGAGGAGAAGATAAT

Function

symbol description
rwdd3 Predicted to be involved in positive regulation of protein sumoylation. Predicted to act upstream of or within negative regulation of NF-kappaB transcription factor activity and positive regulation of hypoxia-inducible factor-1alpha signaling pathway. Predicted to be located in cytoplasm and nucleus. Is expressed in nervous system and pancreatic system. Orthologous to human RWDD3 (RWD domain containing 3).
hccsa.1 Predicted to enable holocytochrome-c synthase activity. Predicted to be involved in cytochrome c-heme linkage. Predicted to be located in mitochondrial inner membrane. Predicted to be active in mitochondrion. Human ortholog(s) of this gene implicated in linear skin defects with multiple congenital anomalies 1 and microphthalmia. Orthologous to human HCCS (holocytochrome c synthase).

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K01764 HCCS; cytochrome c heme-lyase

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_05397192_05402109.mRNA True 1497 mRNA 0.46 9 5397095 5402109

Neighbor

gene id symbol gene type direction distance location
CI01000004_05389431_05393230 TMEM56 coding upstream 2884 5389370 ~ 5394211 (+)
CI01000004_05343381_05353920 NA coding upstream 42864 5343381 ~ 5354231 (+)
CI01000004_05238552_05246750 TECRL2B coding upstream 149981 5237204 ~ 5247114 (+)
CI01000004_05227614_05231253 OLFM3, OLFM3A, OLFM3B coding upstream 165043 5227614 ~ 5232052 (+)
CI01000004_05154049_05203177 COL11A1B, COL11A1 coding upstream 193918 5154049 ~ 5203177 (+)
CI01000004_05454350_05455993 NA coding downstream 51732 5453841 ~ 5455993 (+)
CI01000004_05459139_05467673 PTBP2B, PTBP2 coding downstream 57030 5459139 ~ 5468857 (+)
CI01000004_05474127_05476501 NA coding downstream 70970 5473079 ~ 5476755 (+)
CI01000004_05735852_05752650 PLPPR4, PLPPR4A coding downstream 333689 5735798 ~ 5754011 (+)
CI01000004_05781905_05788633 PALMD coding downstream 379493 5781602 ~ 5790006 (+)
G27836 NA non-coding upstream 27150 5369697 ~ 5369945 (+)
G27801 NA non-coding upstream 39239 5355151 ~ 5357856 (+)
G27794 NA non-coding upstream 120743 5276112 ~ 5276352 (+)
G27791 NA non-coding upstream 131779 5264824 ~ 5265316 (+)
G27782 NA non-coding upstream 143050 5253669 ~ 5254045 (+)
G27921 NA non-coding downstream 39255 5441364 ~ 5441713 (+)
G27943 NA non-coding downstream 77031 5479140 ~ 5479363 (+)
G27944 NA non-coding downstream 77426 5479535 ~ 5479749 (+)
G27924 NA non-coding downstream 79696 5481805 ~ 5581710 (+)
G28018 NA non-coding downstream 237622 5639731 ~ 5639932 (+)
G27805 NA other upstream 23292 5372825 ~ 5373803 (+)
CI01000004_03550525_03552621 PTGER4C other upstream 1844649 3550329 ~ 3553423 (+)
G26245 NA other upstream 1874702 3509017 ~ 3522393 (+)
CI01000004_02745885_02768971 NA other upstream 2638157 2745885 ~ 2769135 (+)
G25992 NA other upstream 2660327 2736536 ~ 2736768 (+)
G28165 NA other downstream 330480 5732589 ~ 5733001 (+)
G28302 NA other downstream 1067919 6470028 ~ 6502087 (+)
CI01000004_06571261_06572539 SEP15 other downstream 1169111 6570771 ~ 6572667 (+)
CI01000004_07654234_07655677 MRPL34 other downstream 2252663 7654234 ~ 7656383 (+)
CI01000004_08414451_08436256 NA other downstream 3031596 8414316 ~ 8439933 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location