CI01000004_05459139_05467673 (PTBP2B, PTBP2)


Basic Information

Item Value
gene id CI01000004_05459139_05467673
gene name PTBP2B, PTBP2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 5459139 ~ 5468857 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_05459139_05467673.mRNA
CTAATGGAGGTGACAGTAAAAAACTGAGGGTGGAGGACAGCATGGATAGCCCACCGTCTAGAGTCATTCATATTCGGAAACTCCCCAATGAGGTTTCCGAGACTGAGGTCATCGCACTGGGCTTGCCCTTTGGAAAGGTCACTAATATCCTGATGCTTAAAGGCAAAAATCAGGCATTTTTGGAGCTGGGAACAGAGGAAGCAGCTGTTACCATGGTGAACTACTACACAGCTGTTACACCTCAAGTGCGTAATGTCCCAGTGTTCATTCAGTACTCCAACCACAAAGAGCTCAAGACTGACAGTGCGCTCAACCAGCGAGCTCAGGCCGTGCTGCAGGCGGTGTCTGCGGTCCAGGAGGGCGGCTCTCCAAGCTCGGACACGGCCGGTGAGAGTGTGTTAACACCTGCCCCCAGCCCAGTACTGCGAATAATCATCGACAACATGTTCTACCCAGTCACCCTGGACGTCCTCCAACAGATTTTCTCCAAGTTTGGGACCGTCATGAAGATAATCACATTCACCAAAAATAATCAGTTCCAGGCTCTTCTGCAGTTCAGTGACCCAGTAAATGCCCAGCAGGCCAAACTGTCTTTGGATGGCCAGAACATATACAACTCTTGCTGCACTTTGCGCATTGACTTCTCCAAGCTGGTCAACCTGAACGTAAAATACAACAACGACAAAAGCCGGGATTATACCCGGCCCGAGCTGCCCGCAGGAGATGGCCAACCACCCGTGGACCCCTCTGTGGCCGCCGCTCTCAGCAAAGATTCCACCTCCCTGCTCGGACAGGGACTTTTCCAGTGCTGTCAGAATTGGCAGGGCTTTCATGTTGAAACCACCCCAACCATTTGTCCTGACTTGACATGCAAGATTCATAAACAGTGTCGCTATTTGTCAAAGCATAAATCTGAAGCTGCAACAATAAGCCCTTCCATTCTGCATTATGGGCCTGACACAGTTAGAATGCATGGCCATAGGGCAGATCTGGCTGAGATGCTGAGCCGTCGGCTCTTCCTGGTTATGTGGGCTGACATGGTCCTTCCTCTCTTTTTCTTTCTCGCTGTAGGGGCCATCAGCCCTCTGAGTGCGGCAGCGGCGGCGGCGGCAGCTGCAGGGAGGGTAGCGCTGTCCGGACATTCGGGACCTGGCGGAGTGCTCTTGGTCAGCAACCTCAACGATGAGATGGTTACGCCCCAAAGTCTGTTTACCCTCTTCGCCATGAGCCATCTGAATGGACAGAAGATGTATGGCAAGATCATTCGTGTGACACTCTCTAAGCACCAGACAGTACAGCTGCCTAGGGAGGGTTTAGATGATCAGGGCCTAACCAAGGACTTCACCAGTTCTCCACTACATCGCTTCAAGAAGCCCGGGTCTAAGAACTTCCAGAACATCTTCCCCCCTTCTGCTACACTTCATCTCTCTAACATACCTGAGAATGTGACAGAGGAGGATTTACGACTGCTCTTCTCTAACTCCGGCGGTACAGTGAAAGCGTTCAAGTTTTTCCAAGATCGCAAAATGGCTCTGCTGCAGATGTCCACGGTGGAGGAGGCGATTCAGGCACTCATTGACCTTCACAACTACGACATGGGCCGTGGTCACCGCCTGAGAGTGTCTTTCTCAAAGTCTACCATCTGAGGATTCCCTGGTGCTATGTCACCTTTCCTTTCGCCCCCAGGAGCCTCAAGTCGAAGTCATTTTTACCAGTCATTCCTTAACACCATATCAAAAACTTCAATGAGAATGGCCCTTAAAGGAACACTCGCTCTGTATCTGCTCCTGCTATTGTTTGTTTGGCCAGCTGTTATTCTATTTTAGGATGGATTGACAAAAATGTGCCTTACTTAGCAAAATAGCGTCATCCTTTTGCTCCCGTCATTACAGATTATAGAGGTTTAGGCACATTATGTGTGATGATTTGTAACCTTTACAATCACCTTGCTTTGTTGTTTTGAAGGGTTTTGAAAGTGATAGTTTATTTAGCTCTTGTGTCCTCACCTTGTCATATTTTTTAAAAAACAATTTTTAAGCTTTGAAAGCTAGTCGGCTTGCTTTGATTCAAAGGTAAAAGCTATTTTTTTTATGGTCTGTTGAATTGAATCTGAACACAAGTAATTGAATTTGATGGAATATACTCCAAGTTGTAAATTATCTTGTGCATTTGTTTTATTTTAGGTTGTAGCGTTTCTTTTTTTCTTTGATCAGGCACCCAAGGTACTTTTTGTGATTGAAACCTGTGGTAAACAAAACAATGACAGTGGGGAGCATAGTGTGTGACGTATAGTACCTGCTTTGATATTTCTCACTCACTTTTGCTTCAGTGAATTCTGTTACCCATTTTTAGAAGAAAATCAGAGCATGTGCTGATGGATCTCAGCAGTTGCATGTGTCAGACTGACCATGTTTGATGTTGTGATGTCACATTAATGTAGGGACTGTTGGGACCAAAGTAAATGTGCCTTTAGTCTTACTTTATTCTGCATTGTACAAATGTTTTTTTTCAACCTCTGGAATATTTTTATCAATGGAGAAAAAAAATCAAACTTTCCAACAGACATCACTCATAAATGATCCTTAATTGTCTGTGATTGTAATTGTGTGAGAATCGCTCACTGATTATATTGAAAATGACATTTTTTGTGGTTTAGGTTATGGAAAGGGGAGGGGGGCGTTCTGTACATTTTCTACATGAATTGAGTTTTTACATCTTTAGGAATGTAAAGTTCAGTATAGAAGTGGCACAATTAAAAGTTAATTTTTCTACCAAGCTTGTGCTCGACGGTCCCTGTGTGGTGTAGTGCTTTTATCCTGTAGCATGCTGA

Function

symbol description
ptbp2b Predicted to enable mRNA binding activity. Predicted to be involved in regulation of RNA splicing. Predicted to act upstream of or within RNA splicing and mRNA processing. Predicted to be active in nucleus. Is expressed in central nervous system; cranial ganglion; retinal ganglion cell layer; and retinal inner nuclear layer. Orthologous to human PTBP2 (polypyrimidine tract binding protein 2).
ptbp2 Enables RNA binding activity. Involved in negative regulation of RNA splicing. Predicted to be integral component of membrane. Predicted to be part of spliceosomal complex. Predicted to be active in nucleus.

GO:

id name namespace
GO:0036002 pre-mRNA binding molecular_function

KEGG:

id description
K14948 PTBP2, NPTB; polypyrimidine tract-binding protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_05459139_05467673.mRNA True 2830 mRNA 0.45 11 5459139 5468857

Neighbor

gene id symbol gene type direction distance location
CI01000004_05454350_05455993 NA coding upstream 3146 5453841 ~ 5455993 (+)
CI01000004_05397192_05402109 HCCSA.1, RWDD3 coding upstream 57030 5397095 ~ 5402109 (+)
CI01000004_05389431_05393230 TMEM56 coding upstream 64928 5389370 ~ 5394211 (+)
CI01000004_05343381_05353920 NA coding upstream 104908 5343381 ~ 5354231 (+)
CI01000004_05238552_05246750 TECRL2B coding upstream 212025 5237204 ~ 5247114 (+)
CI01000004_05474127_05476501 NA coding downstream 4222 5473079 ~ 5476755 (+)
CI01000004_05735852_05752650 PLPPR4, PLPPR4A coding downstream 266941 5735798 ~ 5754011 (+)
CI01000004_05781905_05788633 PALMD coding downstream 312745 5781602 ~ 5790006 (+)
CI01000004_05800602_05802011 NA coding downstream 331745 5800602 ~ 5802087 (+)
CI01000004_05812640_05834517 AGL, AGLA coding downstream 343783 5812640 ~ 5834517 (+)
G27921 NA non-coding upstream 17426 5441364 ~ 5441713 (+)
G27836 NA non-coding upstream 89194 5369697 ~ 5369945 (+)
G27801 NA non-coding upstream 101283 5355151 ~ 5357856 (+)
G27794 NA non-coding upstream 182787 5276112 ~ 5276352 (+)
G27791 NA non-coding upstream 193823 5264824 ~ 5265316 (+)
G27943 NA non-coding downstream 10283 5479140 ~ 5479363 (+)
G27944 NA non-coding downstream 10678 5479535 ~ 5479749 (+)
G27924 NA non-coding downstream 12948 5481805 ~ 5581710 (+)
G28018 NA non-coding downstream 170874 5639731 ~ 5639932 (+)
G28020 NA non-coding downstream 172983 5641840 ~ 5642113 (+)
G27805 NA other upstream 85336 5372825 ~ 5373803 (+)
CI01000004_03550525_03552621 PTGER4C other upstream 1906693 3550329 ~ 3553423 (+)
G26245 NA other upstream 1936746 3509017 ~ 3522393 (+)
CI01000004_02745885_02768971 NA other upstream 2700201 2745885 ~ 2769135 (+)
G25992 NA other upstream 2722371 2736536 ~ 2736768 (+)
G28165 NA other downstream 263732 5732589 ~ 5733001 (+)
G28302 NA other downstream 1001171 6470028 ~ 6502087 (+)
CI01000004_06571261_06572539 SEP15 other downstream 1102363 6570771 ~ 6572667 (+)
CI01000004_07654234_07655677 MRPL34 other downstream 2185915 7654234 ~ 7656383 (+)
CI01000004_08414451_08436256 NA other downstream 2964848 8414316 ~ 8439933 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location