CI01000004_05474127_05476501


Basic Information

Item Value
gene id CI01000004_05474127_05476501
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 5473079 ~ 5476755 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_05474127_05476501.mRNA
ACATAAAAGATCAGCAGTAGCTTATAATGTTACAGTAATGCTACACCCTTCATCCCTTCGAAGCTCTCACTCCGGAGGGTAAACCCTTTTGAAGGGATTAGGGCATAGGGATGAGCCCTTCCGAATGGAACGCAGGGTGAAAGTTTTGACTGCTTATATCTCCTAAATGCAAATTTTGTCATTGTTTTGGAACACACCAGCTTATTCATAACATTAAGGCTAACCTATTCATACTAAAAGCTAAAAAACTTAAGTTTTGATTTCAGGGGGACTTTAAAAAAATTGCATTCCACTGCCCTGTTTTTAAATGCAAAAATGCTGTAGGAATGGCCGTTACCCGTTTGTCAACCCGAACATAGACGTGTTCATGGGTTATCGCAAATTTTGCGATGTCTGATTCTTCAAAGAATCATTCTATTGAATTGCTTTATCTGTTTCACAAAACTAATCTAAATGATTTGTTTATGAATTGAAGTGATACGGTTTTCGAGTTCACATAATGATTCATTCCATTCATGCTATCCTGTGGCTTCAGAAGACTTGGAATTTAGCGCAAATTGACTACTTTTAATGAAAGTTTCCGTCCCCATTTATCACAACTACATGGAAAAAAAGCGAACATTAAAAAAAATTCCTTCATTTACAACAGAAGAAAGTAAGTCATAAAAGTTCAGAACGGCAGGAGGTAAATGGTGACAGAATTTTAATTTTTTTGGTGAACTCTTTAGAGCAGCTTTTGTTAGCATGTTGTGTACATAGGGTGAACGCTAATGTTCTTAATGTTAGTGGTTCATGACAGCAGCACAGTTTGCTTATGACAGAACAGCTCTGTCAGCGAGTACGGAACATGGTATCACCTACAGGAGATTCACATCTTAGCTAGGGACGACATCTTTTTACCCACGCTGACATAGAGCTGTAAAAATAAGGAGCGTGGAAAATGTGTACAGGACGTTTATTCACAGATTAAAGTCGAATCTTCTAGATCACGGAATGAGAGAACGATTTCCCAAATCAAATGGGCTTTTATCTATATGCAAATGACATGATGGCCTTCTTGAATTTATTTTTAATGACTCAAGAAGAGGTTGGCTGTAAGACGCAGAGCATTCGCAATGGACGAGAGCTCACCACTGTGAATGTTTCAATTTCTCTATTCAGGTCATTGTATTATATCACAGAGACAAAGCAGTGTTTTATGCTTATTGAAACAAAGACTGGCTTGACTGGCCAGAAGCCTGTCTTTGGAGACGGTTCTCCTGTGGAGAAGGCCTACACGTCCTGGACCAGCCGGTCCATCGGTCAGCCGGTCAGGACAAGAGGAGGAGAGACGTTTCACTTGCAGCCTGCAGCTTTTGGTGTCTTCATCAGAAAGGTTAACTCCTCTCCTCCATTGAGGAACGACCTGCAGGGCAGACCTCACCACTGGGGAAGGAAAATGAGAGCTCTGAAGGTATGGAGCCAGGCTCGCAGTGGCTTTTACGGAGGCTGTGAAGCTGTAAGGGTGTGCCAAGGCTTGGCAGGAAGGTGCATTCGTAGGGAGAGCAGGCCAGGACCGAGCTCCGGCGTAATGGCTGATGAAATGAGATTAGCATTGGCCAGTGTTCCACAGACATCCTACCTCCACCAGTCTAATTGAATTAAAGCAGCAAACAAGAGTTTATATCTTTATGACTGGGAGGGAGCCACAGTATTGAAAACACTGACAAGGGCCATTGTTGCATCCTGAATAGGATTGTTTGTGCAGCAGTGTGTATGTCGTGTACCATCCTGCTGTGCACTGCTTTCTTTTTTTATTTATTTTTTTAAATATACCTTTCCCACTGTGAGAATTGATTGGTGTTTAAATCTACACAAACAATTAAAAATTTACATGTGATAAACTCGTTTAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_05474127_05476501.mRNA True 1893 mRNA 0.41 2 5473079 5476755

Neighbor

gene id symbol gene type direction distance location
CI01000004_05459139_05467673 PTBP2B, PTBP2 coding upstream 4222 5459139 ~ 5468857 (+)
CI01000004_05454350_05455993 NA coding upstream 17086 5453841 ~ 5455993 (+)
CI01000004_05397192_05402109 HCCSA.1, RWDD3 coding upstream 70970 5397095 ~ 5402109 (+)
CI01000004_05389431_05393230 TMEM56 coding upstream 78868 5389370 ~ 5394211 (+)
CI01000004_05343381_05353920 NA coding upstream 118848 5343381 ~ 5354231 (+)
CI01000004_05735852_05752650 PLPPR4, PLPPR4A coding downstream 259043 5735798 ~ 5754011 (+)
CI01000004_05781905_05788633 PALMD coding downstream 304847 5781602 ~ 5790006 (+)
CI01000004_05800602_05802011 NA coding downstream 323847 5800602 ~ 5802087 (+)
CI01000004_05812640_05834517 AGL, AGLA coding downstream 335885 5812640 ~ 5834517 (+)
CI01000004_05837208_05841141 NA coding downstream 360453 5837208 ~ 5841141 (+)
G27921 NA non-coding upstream 31366 5441364 ~ 5441713 (+)
G27836 NA non-coding upstream 103134 5369697 ~ 5369945 (+)
G27801 NA non-coding upstream 115223 5355151 ~ 5357856 (+)
G27794 NA non-coding upstream 196727 5276112 ~ 5276352 (+)
G27791 NA non-coding upstream 207763 5264824 ~ 5265316 (+)
G27943 NA non-coding downstream 2385 5479140 ~ 5479363 (+)
G27944 NA non-coding downstream 2780 5479535 ~ 5479749 (+)
G27924 NA non-coding downstream 5050 5481805 ~ 5581710 (+)
G28018 NA non-coding downstream 162976 5639731 ~ 5639932 (+)
G28020 NA non-coding downstream 165085 5641840 ~ 5642113 (+)
G27805 NA other upstream 99276 5372825 ~ 5373803 (+)
CI01000004_03550525_03552621 PTGER4C other upstream 1920633 3550329 ~ 3553423 (+)
G26245 NA other upstream 1950686 3509017 ~ 3522393 (+)
CI01000004_02745885_02768971 NA other upstream 2714141 2745885 ~ 2769135 (+)
G25992 NA other upstream 2736311 2736536 ~ 2736768 (+)
G28165 NA other downstream 255834 5732589 ~ 5733001 (+)
G28302 NA other downstream 993273 6470028 ~ 6502087 (+)
CI01000004_06571261_06572539 SEP15 other downstream 1094465 6570771 ~ 6572667 (+)
CI01000004_07654234_07655677 MRPL34 other downstream 2178017 7654234 ~ 7656383 (+)
CI01000004_08414451_08436256 NA other downstream 2956950 8414316 ~ 8439933 (+)

Expression


Co-expression Network