LOC122342444 (krt1-19d,LOC107665143,LOC107666326,LOC107753925,LOC107563035)


Basic Information

Item Value
gene id LOC122342444
gene name krt1-19d,LOC107665143,LOC107666326,LOC107753925,LOC107563035
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 28106617 ~ 28110047 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043236236.1
CCTTTATTTACTGACCTGCCAGAGCAGACGCAGACAGACGTTCTCGGTCAACATGGCTTCCTCCTACTCCGCCCGCAGCAGCAGCTACATGTCCTCCAGCGGCTCCATGCGCATGTCCTCGTCCAGCGCGAGAAGCAGCCGCATGAGCACCGCCAGGGCCAGCAGCGTGCACGCCGGCTCCGGAGGCTCAGGGGTCCGCATCTCCAAGGCCGCGTACTCCGTCGGAGGTTTCGGCGCGTCGGGATTTGCAGACAGCAGCATCGTTGGCAACGAGAAGCTCACCATGCAGACCCTCAACGACCGCCTGGCTGCTTACCTGGTCAAGGTGCGCTCGCTGGAGAAGGCCAACGCTGATCTGGAGCTGAAGATCCGCCAGTTCCTGGATGGCAAAGCCTCCCCCGTGGCTCGGGACTACAGCGCCTACTATGTCACCATAAAGGATCTTCAGACTAAGATCATGGCAGCCATTCACCTGAAGGGAGGAATCCATCTCAGCATTGACAACACCAGCCTGGCCATTAACGATTTCAAACTAAAATATGAAAGCGAGCTGATCATGCGTCAGTCAGTGGAGTCAGACATCGCTGGCCTGAAAAGGGTGCTTGATGAGCTCAACATCACCAGAAAAGACCTCACCATGCAGATCGAAGGGCTGAAGGAGGAGCTGGTCTATCTGAAGAAGAATCACGAGGAGGATCTGCTGGCCGCACGCGCTCAAATGAGCGGACAGGTTCACGTGGAGGTCGATGCCGCTCCACAGCAAGATCTCACCAAGGTCCTGGCAGAAATCCGTGAGCACTACGAAGCCGTCACAGCGAAAAACCAAAGAGATCTGGAGCACTGGTTCAAGACGAAGACAGAAACTCTGAAACAAGAAGTCGTCACCAGCACCATGGACCTGAATACGTCTCGCACGGAAATCACTACGGTCAAATCCACACTACAGTCTTTGGAAATCGAACTCCAGTCCCTCTTAGCCATGAAAGCGTCTTTGGAGGCCACACTGAATGAAACCAAGAATCGTTATTCCATGAAGCTGTCCAGCTACCAGCATCAGGTCACCGTCCTGGAGGAGCAGCTAGTCCAGCTCCGCGCCGACCTGGAGCGCCAGCGTCAAGAGTACCAGATACTCCTGGACATCAAGACCAGGCTGGAGATGGAGATCGCCGAGTACAGGAGACTGCTGGACGGAGAAACCACCGTCAAATCAACCTCCACTTCCACCTCAAGGACAAAAGTCATCACGGTCGTGGAAGAGGTCGTGGATGGAAAAGTGGTCTCCACCTCCACGTCCTCGTCCATGTCCGACAGCCGCAGACTCTGATTGGCCGCAATGCCCGTTTACGTTTGCAGTACGCCCAAAACTGGAagctgaatgaaataaaacggcaTTTAAACTCCTGGAGCTCTTAtcgcttcatttatttgattaagtTATGCATATTCACTTGAACTGATTGATATTAAAAGTGGGAATACGTTTGGAA

Function

symbol description
krt1-19d Predicted to enable structural molecule activity. Predicted to be located in intermediate filament. Is expressed in epidermis. Human ortholog(s) of this gene implicated in several diseases, including corneal dystrophy (multiple); ectodermal dysplasia (multiple); epidermolysis bullosa simplex (multiple); focal nonepidermolytic palmoplantar keratoderma 1; and hereditary mucosal leukokeratosis. Orthologous to several human genes including KRT12 (keratin 12); KRT13 (keratin 13); and KRT14 (keratin 14).

NR:

description
PREDICTED: keratin, type I cytoskeletal 13-like

GO:

id name namespace
GO:0005882 intermediate filament cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043236236.1 True 1487 mRNA 0.54 8 28106617 28110047

Neighbor

gene id symbol gene type direction distance location
krt91 krt91,cki,LOC107727715,LOC107563033,LOC107753907,LOC107666324,LOC107549866,LOC107753917 coding upstream 23647 28080859 ~ 28082970 (+)
si:ch211-264f5.2 NA coding upstream 142387 27952149 ~ 27964230 (+)
zgc:174904 LOC107752529,LOC107665157,LOC107549855 coding upstream 161325 27941676 ~ 27945292 (+)
LOC122342524 NA coding upstream 167797 27934637 ~ 27938820 (+)
si:ch211-264f5.6 LOC107549843,LOC107665174,LOC107752524,LOC107549858 coding upstream 183408 27909429 ~ 27923209 (+)
LOC122342376 LOC107694127,LOC107717944,LOC107590657,LOC107752637,LOC107552269 coding downstream 87189 28197236 ~ 28201011 (+)
dhdh.1 LOC107665437,LOC107668471,LOC107709394,LOC107553352 coding downstream 244383 28354430 ~ 28360242 (+)
dhdh.2 zgc:101723,LOC107665090,LOC107712874 coding downstream 250899 28360946 ~ 28367478 (+)
LOC122343436 parp6,LOC107668484,LOC107665100,LOC106587213 coding downstream 277460 28387507 ~ 28410310 (+)
celf6 celf6,LOC106535005 coding downstream 311202 28421249 ~ 28537332 (+)
G31548 NA non-coding upstream 38827 27960947 ~ 28067790 (+)
G31557 NA non-coding upstream 127484 27925447 ~ 27979133 (+)
G31549 NA non-coding upstream 154619 27912317 ~ 27951998 (+)
G31567 NA non-coding upstream 172475 27931981 ~ 27934142 (+)
G31543 NA non-coding upstream 282912 27823406 ~ 27823705 (+)
G31596 NA non-coding downstream 10205 28120252 ~ 28121159 (+)
G31603 NA non-coding downstream 34393 28144440 ~ 28162265 (+)
G31621 NA non-coding downstream 116353 28226400 ~ 28228301 (+)
G31631 myo7aa,LOC107660700,LOC106612882,LOC106581013 non-coding downstream 160055 28270102 ~ 28270584 (+)
G31551 LOC107709388,LOC107595343,LOC107712845,LOC107668482,LOC107553360 non-coding downstream 262338 28372385 ~ 28375787 (+)
LOC122342806 znf384l,LOC107665159,LOC107549826,LOC108433737,LOC107554334,LOC106569967,LOC107754029,LOC107752514,LOC105892077 other upstream 700529 27360843 ~ 27406088 (+)
LOC122342372 LOC107752513,LOC107665166,LOC107549841,LOC107753705,LOC107575738 other upstream 735421 27297536 ~ 27371196 (+)
LOC122342494 znf384,LOC107671195,LOC107582054 other upstream 748454 27356812 ~ 27358163 (+)
G31384 NA other upstream 2292992 25812631 ~ 25813625 (+)
G31298 LOC107569336,LOC107690089,LOC107706811,LOC107090263,LOC107391191,LOC105928559,LOC103357353 other upstream 2411236 25693802 ~ 25695381 (+)
G31614 capn5a,capn5,LOC107665347,LOC107660684,LOC107600851,LOC106535735 other downstream 96911 28206958 ~ 28216248 (+)
G31619 capn5,capn5a,LOC107713096,LOC107600851,LOC107660684 other downstream 108686 28218733 ~ 28221417 (+)
G31636 NA other downstream 174980 28285027 ~ 28320694 (+)
LOC122342379 myo7aa,myo7a,LOC107660700,LOC107735900,LOC107600840 other downstream 187255 28297302 ~ 28317582 (+)
G31649 NA other downstream 240306 28350353 ~ 28353226 (+)

Expression


Co-expression Network