CI01000004_09623579_09626179 (BUC)


Basic Information

Item Value
gene id CI01000004_09623579_09626179
gene name BUC
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 9623579 ~ 9626601 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_09623579_09626179.mRNA
TATTGCGGTGTTTTGTATCCTGTGCTGTCTTTCTTCGTCTCCTCACAAGAAATGGAAGGCATAAACAACACTTCACAATCAATGGGAGTTGGGCAACCTCACCATCCAGTAAACCACACCAGACCTTTTTTCTATGTTCAGCCACCATCTCAGCCTTATTTCATGTATCAATGGCCCATGAATCCATATGGCCACTATGGCTTTCCAGGGCCAGCTTTGCACTTTGGCCGTCCTTACATGGCCCCTTATCAGTTTATGCAGTATCCTGGGTATGTGATTCCACATGCACCCATGCAGCCAATCGATTACAGAAGAATCAACCCCCATTATCCTTCTGTTGCATCCTATGACTTGCGCGTCCGCCACCACGTTCAACACGCAGGGATGCACCGGGAGACTGCCTGTTCTGAGGTCCAAACAGATCCTAGTGATTCAGTCAACAAACTGATAGACAAAATTGAGAGTCTTAAGGCCTGTGAACAAGGTGGTGACAAGGGGCTTAACACTGTGGTCTCCTCTACCCCTGATGTAGTGCAGGGAGAGAAGTTGGCCTGTTTAAACGAAGACTCCAAGTTAGAGCTTGCCTCTCAGGAAGGCAAGGAAGAGCAGGTCAATCAGGTCACAAGGCCCACAACCTACAGCGACTCTGCGTATGATGCAGAGTCCAGCCAGGGAAGACTGGATGAATGCGTGTTGTCAGATGTGCTGCCCCTTGACAGTTCCTCTGTCCATGAGGAAGAGGATGCCAATGAGGAAGATGACCAACAGAGTGTTGCTGATGAAATATGCTGCCAAAATGGGAAGTCTGCAGCCAGTGCAACTGGCAATGTGTTTTGTAGTGGTGTCAAAAGCACTGCAGATCCAACAGAGAGCCACGATTTTGAGCAGTTGCAGAATATAGCGTCGACTGATGCTACTGCAGTTATGGAACCTCTTATAAAGCTCTCAGAAGACTTTGACCTGCCGTATCAAATACTTCGCCTGCCCTGCAATAAGACGACAACTGGCCTCAGTCTTGAACGAGAGATTGACCCACTTGTTTACTTTGATTCTCCATCTACTCTGTTGCCGCCACAAAACTATCTCTCCTCAATTGGCAGCGCATATTCCTACAGCTACTACCCTCAGGTGACCCAAGAGCGCCAGAGCGTCTTGAGTCCATCCATAGATGAACTCTCCTCCAGAGATGAAATGTTCTCCACTGATGTGGAGGATCTTGATCTTGTTCCGGGACACGTCTATGTGGGCGGTGGCAGGCTGGCTGAAAGTGATGTGCCCATTCGTTCCCGTAAAGAGCTCTTGAGTATGGAGAAAACTTGCTCGGTCTGCCAGAAAACATGCATATGCTGTGGGTCAAGCTTGCAGGATGAGGTAGGAATGTGTAAGATGGCTGAACACAGCCATCTTGAGAGGAGTGAGGTGTCTGATCAAGATTGCGAGTATGACCTTGAAGGAGAAGTGCGGAGTAACTGCGAGTCTCCAAGAGTTTCCAAGAGGAAGTGTTGTAGTAGGCACGCGCTACCCTCTTGTGGGCATCACTGTGCCAAACACCGACACAGGAAGCTGCTGTGTGAAGGCCAAGAGAGCTGTGATCTACGCGAGCAGGCTCGGGTGCATCCCAAAGGAGAGTGCTGTGAGGAGTATGGTGCTCTGGCTAAAGCAGATAAGAGAATTCAAAAGGGTGCCTTGTGCAGGCCTTGTAATGGTGCTATGAAGAAAAGAGGCACACGATACTAAACCATTATGCACTGCTGTAGTACTTAATGTATTACCCTAAAATTGTGTAAAATGCACTTTCACTATGAATGTACACATGGACACTGTTCTTGACTGTATGTAACTGAAAAGTATGACAGTGATGTACACCTTGCTGCATTTCCAGTGCTCAAGTTAACTTTCTATTTTGGGTGCAATGCATTCATCTTAATATTACGCTGAGACTGCTCTCATTGGACCAGGCCTTGACCCATGCCTACAAGGCCTCTTTCTCATGTTCCTCGATCTGGGAGGTGTAGATCTTGTCTGGTAAGGGCTCTGAATTTCTGCATGATCAAGGTCTGGCCCACTGAGACGGTTTCAAAATATTTTGACACTGGAAATGCAGCCGGTTTAAGGGGTGATGCAAAGGAAAAAAAAAAAGAGAAAAGGGAGGATGAGAA

Function

symbol description
buc Involved in oocyte animal/vegetal axis specification. Acts upstream of or within morphogenesis of follicular epithelium and pole plasm assembly. Located in P granule and mitochondrial cloud. Is expressed in blastomere; female organism; and germ line cell.

NR:

description
unnamed protein product

GO:

id name namespace
GO:0016333 morphogenesis of follicular epithelium biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_09623579_09626179.mRNA True 2159 mRNA 0.48 4 9623579 9626601

Neighbor

gene id symbol gene type direction distance location
CI01000004_09533613_09534019 NA coding upstream 89216 9533241 ~ 9534363 (+)
CI01000004_09526514_09528258 TMEM68 coding upstream 95266 9526514 ~ 9528313 (+)
CI01000004_09524214_09525580 TMEM68 coding upstream 97999 9524214 ~ 9525580 (+)
CI01000004_09429758_09474615 ZSWIM5 coding upstream 148964 9429758 ~ 9474615 (+)
CI01000004_09383327_09385444 ELOVL8A coding upstream 238085 9383327 ~ 9385494 (+)
CI01000004_09627968_09635256 RNF152 coding downstream 1367 9627968 ~ 9635801 (+)
CI01000004_09684489_09685469 MC4R coding downstream 57888 9684489 ~ 9686012 (+)
CI01000004_09980195_09995816 CDH10A coding downstream 353594 9980195 ~ 9995893 (+)
CI01000004_10058538_10090881 CDH12A coding downstream 431937 10058538 ~ 10091049 (+)
CI01000004_10169407_10212947 CDH18 coding downstream 542806 10169407 ~ 10213189 (+)
G30190 NA non-coding upstream 6312 9616647 ~ 9617267 (+)
G30196 NA non-coding upstream 7391 9615757 ~ 9616188 (+)
G30177 NA non-coding upstream 197232 9426115 ~ 9426347 (+)
G30172 NA non-coding upstream 199734 9423645 ~ 9423845 (+)
G30169 NA non-coding upstream 204819 9418545 ~ 9418760 (+)
G30243 NA non-coding downstream 53985 9680586 ~ 9680809 (+)
G30240 NA non-coding downstream 76224 9702825 ~ 9706274 (+)
G30395 NA non-coding downstream 133218 9759819 ~ 9763294 (+)
G30447 NA non-coding downstream 189210 9815811 ~ 9816085 (+)
G30505 NA non-coding downstream 262928 9889529 ~ 9889756 (+)
CI01000004_08976512_08980033 TTPA other upstream 642595 8976254 ~ 8980984 (+)
G28859 NA other upstream 1023976 8599235 ~ 8599603 (+)
CI01000004_08414451_08436256 NA other upstream 1172352 8414316 ~ 8439933 (+)
CI01000004_07654234_07655677 MRPL34 other upstream 1967196 7654234 ~ 7656383 (+)
CI01000004_06571261_06572539 SEP15 other upstream 3049158 6570771 ~ 6572667 (+)
G30797 NA other downstream 870775 10497376 ~ 10497788 (+)
G31710 NA other downstream 2010650 11637251 ~ 11642400 (+)
CI01000004_11666900_11667179 NA other downstream 2038172 11666900 ~ 11667659 (+)
G31865 NA other downstream 2565529 12192130 ~ 12197418 (+)
CI01000004_12646972_12652534 NA other downstream 3016153 12646838 ~ 12652570 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location