CI01000004_10930457_10940078


Basic Information

Item Value
gene id CI01000004_10930457_10940078
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 10930269 ~ 10940391 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_10930457_10940078.mRNA
GGATAAAAGTACAACCGGTTCTTGAAGAGCAGTGGATATGATATGGAAAAGGTCTTTGACTGGTTCGAGTGGGTTTCTTCATTACTCGTGTCAATAACTGGAGTTTAGGATTACCATTCATTATGTGACAGTCTCATTCTGGATCCTACAAGATTTTTGTTTTTGTGTTCCACCAGTCGGGTAGTTAAATGGTGCTAATAACTGAAAATGGTGTTGCAGGAGTTGTACATCTGGTCAAAGATCACCAATATGGCACCAGTGTCAACCAAGCAAGAGGCTGGAACAATGAGTCCTTCATACAGAGCTCCAATTCTGTGGAGCCAACAGAGGACTCTTATTATGCAGATGATGAAGACCACCATCTTTATGATGATGATGATGATGACGACATCTACCAAGAGTTTGAGGAGTTGGACTTTTCTGAACTACCGGATAGCAAGAGCATTGTGTCAGACGATTCCTTCTACCCACCTGATGATTCGCTCAACTTTGAAAAATGCCCGAGTCCTGAGAGCCCCGAGCCACTCAGCTTCTTCAAAGCATGCTGTTCAAACAATGCCATCATCGTCAAAATCATGATAAGACAAGGTGTGACAGAGGAGGAGGTGCGAGAGGTGGACAAAAATAACAGACCCTCAGAAGCTTACAGTTATGACAATGTGGGTGATAACAGTGTCATGTTTATGCAAGGCTATTATCATATCAAAGAGTCTTTAAGCATGCATGATCCACGCAGTGCTCCTCAGGGAATGAGCTCAGGCGCAAAGGCTGTCTCCTTCCTCCATAAATATCGACATTGCATGAGGCTGAGACTTTCAACCGTACATAAATATGTCATTAAAGGCAGAATCTATAAGGAAAGAAATCTAGCTTGGATGGCAGCTACAGGTCTGATTGTGGCGTGTTACCAGGGCTACGTGGATGTGGTCATTGCACTTTCTCAGTGTCCATATGTGGACGTGAACTGGCAGGATAATGAAGGGAATACAGCTCTCATGACTGCTGCACAAGCAGGTCACAGTATGATTACCAACTACCTGCTGAACTATTTTCCCGGGCTTGACACTGAGCGCAGGAACTGCCACGGCTTCACTGCAATGATGAAAGCAGCCATGCAGGGTCGAGCCGAATGCGTGCGGTCTCTCATGATGACAGGGGGAGACATTGAAGCAAGGGACTTTGGCCGTAAGCTGACTCCATGGGAATGGGCCATGTTCACGGGCCGCTACGAGACCGCCAAATTGATATCCCGACTGATGGAACAGCCATGTGCTGAACAGTTTTGTGACTCTTACCGCATGGAGTGGCCTATGCTAAGCGAACTGGTGACCCAATCAAAGGAGCCCAAGTCCTGCTGGAAGAAGTTCTCCGAGTGTGTCTGTAACTTGTTCTCCATCAGCATGAAGACCAACCCCGTAGATGAAGGCGTCATGGACTACATGGTGCGCATGACCACAGCGCTAGCCAGCCCACTCATAGCCACCGCCTGCCACACTGTGTGCCCGGGCAGCCCTCCGTGTGTTGGAAAACGTCGCCCTGCTGTACAGGACATCCTCCGCAGACAGCGTCTTGCTGAGCTGAAGAATCTGGGGCCTGATCGCTTCAACAACTACAAGCGGCTCTTCCAGAACTCCAGGGTGCTGCTGGTGCCGAAGAAGCAGGAGCGGCGCGCCAGTCTGCAGCCACAGTTACTGCATAGCGTAGCGATGGCCTCCAGCGTGGCCCTGAGGAGAAGCAGTCTGCTGCCCCTACACATGATGCGCAGAAGCAGTGTGCGTCCTGGAATGGTGGTACCTAAAGTCATGCTGTGTAAAGCTCCTAGCCCCATGTACATGCCGGAGCGGCCGCCGCGCAGGGCTTCAAAAGACTCGTCACAACTACAGATCCCTAAATGGAGGTACAAAGCTCTGAAGGAGGAGAAGAAGAAAGCTGAAAAGATGGATAGGTTGAGAATCGGGAGGAAAAAGTGATGTGGCTTTTGATGCCTTAATGTTTTTTAAGGATGTTTTCCTCTGGGAAGGCTTGTGTTCTGTGTGAGGGTCAGCACAAATTGTACACTACTCTTTTGAGACTGCCATGGACTTCACTCCTCAGTTCTATAATCTTTAGTCTGATACATTATTTTTAAGTAATAATAATTCTAATTTACAGAATCACCTGACATAATGTTTATTTCATCTTTGAGCCAAGTCATACTTGAAATTTGATGCACAGAAATTTTTATTTCTGTTTTTTATATTGCTCTGAAATTTATGAAAGGGAGTGTTATATAGAGAAGCTATA

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_10930457_10940078.mRNA True 2283 mRNA 0.47 5 10930269 10940391

Neighbor

gene id symbol gene type direction distance location
CI01000004_10907590_10926357 MARCH6, MARCH6.L coding upstream 3637 10907240 ~ 10926632 (+)
CI01000004_10898933_10902376 FAM173B coding upstream 27566 10898933 ~ 10902703 (+)
CI01000004_10888481_10897508 NETO1 coding upstream 32571 10888481 ~ 10897698 (+)
CI01000004_10867891_10869483 SOCS6B coding upstream 59344 10867660 ~ 10870925 (+)
CI01000004_10835420_10847343 CRISPLD1B coding upstream 82926 10835420 ~ 10847343 (+)
CI01000004_11048490_11050698 NA coding downstream 107866 11048257 ~ 11050887 (+)
CI01000004_11062778_11066245 TCEA1 coding downstream 121802 11062193 ~ 11066245 (+)
CI01000004_11091985_11100992 ATP6V1H coding downstream 151289 11091680 ~ 11101817 (+)
CI01000004_11155692_11159471 OPRK1 coding downstream 214253 11154644 ~ 11160500 (+)
CI01000004_11163514_11166543 NA coding downstream 222527 11162918 ~ 11166543 (+)
G31275 NA non-coding upstream 23544 10906477 ~ 10906725 (+)
G31273 NA non-coding upstream 24561 10905416 ~ 10905708 (+)
G30896 NA non-coding upstream 98423 10831564 ~ 10831846 (+)
G30894 NA non-coding upstream 107895 10822151 ~ 10822374 (+)
G30891 NA non-coding upstream 113090 10816914 ~ 10817179 (+)
G31315 NA non-coding downstream 102321 11042712 ~ 11045925 (+)
G31302 NA non-coding downstream 107002 11047393 ~ 11047738 (+)
G31347 NA non-coding downstream 113538 11053929 ~ 11054130 (+)
G31348 NA non-coding downstream 114405 11054796 ~ 11055037 (+)
G31349 NA non-coding downstream 115352 11055743 ~ 11056063 (+)
G30797 NA other upstream 432481 10497376 ~ 10497788 (+)
CI01000004_08976512_08980033 TTPA other upstream 1949285 8976254 ~ 8980984 (+)
G28859 NA other upstream 2330666 8599235 ~ 8599603 (+)
CI01000004_08414451_08436256 NA other upstream 2479042 8414316 ~ 8439933 (+)
CI01000004_07654234_07655677 MRPL34 other upstream 3273886 7654234 ~ 7656383 (+)
G31710 NA other downstream 696860 11637251 ~ 11642400 (+)
CI01000004_11666900_11667179 NA other downstream 724382 11666900 ~ 11667659 (+)
G31865 NA other downstream 1251739 12192130 ~ 12197418 (+)
CI01000004_12646972_12652534 NA other downstream 1702363 12646838 ~ 12652570 (+)
CI01000004_14036114_14036449 KIAA0040 other downstream 3083156 14035393 ~ 14039142 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location