rchy1 (LOC107725104,LOC107723308)


Basic Information

Item Value
gene id rchy1
gene name LOC107725104,LOC107723308
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 389910 ~ 394464 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU47216
GTGAAACATGGCTGCCACCGAAGTTGGATGTGAACATTACGTTCGCAGCTGTTTGTTAAAAGCGCCCTGCTGTGGAAAATTTTATGTTTGCAGACTTTGTCATGATGGTGAAGAGAACCATCAAATGGACCGATTTAAAGTCCGAGAGGTCAAATGTGCTGCATGCAATAATGTTCAAGAGGCTCAGCAGATATGTAAAGAATGTAAaatga
>TU47217
AATTATATGTGATCTATATCgtaattatatttcttatttcttatatttcttcTCATTctgttaaaatgctaaaatcctGTGACCCACGTGTTATTTGAcgtaaaacccttttttttttgcttgcagaACCTGCTTTCAGGAGATGTGCAGAACTGGGTAAGGTGTGATATTTTCTTTCTAATGGCTTGTTGCTGAATCTGCACGGATTCGTGTGTGACACTTCCTGTCTCGCAGCGCTTACCGCTGTCCTCTGTGTATGCATTCGGCCCTCAACATGAAGGAGTGGTGGGAAGAGAGGGATAAGGAAATTGCCCAGACTCCCATGCCCACAGAGTACCAGGACACTACGGTCAGGATCATATGCAATGACTGCCAGGCTCGCTCCACTGTCTCCTTCCATGTGCTGGGCATGAAGTGCAGCTCCTGTGGCTCTTATAACACGGCGCAGGACGGCGGGCTGATGGCGGCTCCTCCTGTAGACGTACGACAGCCCGCAGAGCACACGCTCGAAGAAGAGCCCAACACGGAGCACCACGAGTGACGTTTAGCCTCACAAACATCTCTGTTAAGCTTTTATAAAACTGACGTGTAGAAGGCGAGCTCTCCTCTCTCAAGTCTGTAGATCTGCTCTTATTTTTCTTGCCGGATTGAGGCTTCTTTAGTCGTACCATTCCACATGCATTTTGTCATAAAGGATGTTAAAGGTAATCCTGCGCTAGGAGGATAAACCTGACTTCTTTTGTCTGTCGAGAACTTTTTTGGTTTGCTTTAAGGAAAGGTATCCTTTATATAACGGGCTCATTCAGGGACAATGGATGTGATTTACAAACCTTTgttaatttcagaattatttaatgctatttattgattaactctggaaaaaacacattgtattacagaaataaaatgatcacattgca
>XM_043240632.1
ggagttttaaataaagttttctaGCGTTTAAGTGAAACATGGCTGCCACCGAAGTTGGATGTGAACATTACGTTCGCAGCTGTTTGTTAAAAGCGCCCTGCTGTGGAAAATTTTATGTTTGCAGACTTTGTCATGATGGTGAAGAGAACCATCAAATGGACCGATTTAAAGTCCGAGAGGTCAAATGTGCTGCATGCAATAATGTTCAAGAGTCTCAGCAGATATGTAAAGAATGTAAAATGAAGTTTGGGGAGTATTACTGTGACATTTGCCATCTCTTTGATAAAGACAAGAAGCAGTACCACTGCCAGCCCTGCACAATATATaACCTGCTTTCAGGAGATGTGCAGAACTGGGTAAGCGCTTACCGCTGTCCTCTGTGTATGCATTCGGCCCTCAACATGAAGGAGTGGTGGGAAGAGAGGGATAAGGAAATTGCCCAGACTCCCATGCCCACAGAGTACCAGGACACTACGGTCAGGATCATATGCAATGACTGCCAGGCTCGCTCCACTGTCTCCTTCCATGTGCTGGGCATGAAGTGCAGCTCCTGTGGCTCTTATAACACGGCGCAGGACGGCGGGCTGATGGCGGCTCCTCCTGTAGACGTACGACAGCCCGCAGAGCACACGCTCGAAGAAGAGCCCAACACGGAGCACCACGAGTGACGTTTAGCCTCACAAACATCTCTGTTAAGCTTTTATAAAACTGACGTGTAGAAGGCGAGCTCTCCTCTCTCAAGTCTGTAGATCTGCTCTTATTTTTCTTGCCGGATTGAGGCTTCTTTAGTCGTACCATTCCACATGCATTTTGTCATAAAGGATGTTAAAGGTAATCCTGCGCTAGGAGGATAAACCTGACTTCTTTTGTCTGTCGAGAACTTTTTTGGTTTGCTTTAAGGAAAGGTATCCTTTATATAACGGGCTCATTCAGGGACAATGGATGTGATTTACAAACCTTTgttaatttcagaattatttaatgctatttattgattaactctggaaaaaacacattgtattacagaaataaaatgatcacattgcatcaaa

Function

NR:

description
PREDICTED: RING finger and CHY zinc finger domain-containing protein 1-like isoform X1

GO: NA

KEGG:

id description
K10144 RCHY1, PIRH2; RING finger and CHY zinc finger domain-containing protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
TU47216 False 212 lncRNA 0.42 3 389941 391106
TU47217 False 920 TUCP 0.43 2 392551 394459
XM_043240632.1 True 1052 mRNA 0.44 6 389910 394464

Neighbor

gene id symbol gene type direction distance location
si:ch211-155m12.1 NA coding upstream 14391 373796 ~ 375519 (+)
tnksb tnksb,LOC107750292 coding upstream 16808 353034 ~ 373102 (+)
agpat9l agpat9l,LOC107725122,LOC107704894,LOC107567651,LOC107594581,LOC105902903,LOC108411269,LOC108255643 coding upstream 40092 341495 ~ 349818 (+)
osmr LOC107725162,LOC107704185,LOC107594575,LOC107567646 coding upstream 152566 224009 ~ 237344 (+)
LOC122345227 LOC107707936,LOC107571030 coding upstream 205041 180797 ~ 184869 (+)
si:ch211-12e13.1 LOC107725096,LOC107594596,LOC107705059 coding downstream 16986 411450 ~ 414874 (+)
si:ch211-12e13.12 LOC107653106,LOC107725106,LOC107594598,LOC107572264,LOC107723305,LOC107667694 coding downstream 20358 414822 ~ 417202 (+)
LOC122345394 ugt2b3,ugt2b1,ugt2b5,LOC107667397,LOC107572263,LOC107723313,LOC107725113,LOC107725071 coding downstream 59618 454082 ~ 462279 (+)
LOC122345389 ugt2b3,zgc:172315,ugt2b1,ugt2b6,LOC107723313,LOC107725113,LOC107572263,LOC107667397 coding downstream 69617 464081 ~ 483423 (+)
LOC122345390 ugt2b3,ugt2b1,ugt2b5,LOC107667397,LOC107572263,LOC107723313,LOC107725113,LOC107704326 coding downstream 69690 464154 ~ 468427 (+)
G31998 NA non-coding upstream 5691 383514 ~ 384219 (+)
G31983 NA non-coding upstream 90536 298474 ~ 299374 (+)
G31967 NA non-coding upstream 93608 295692 ~ 296302 (+)
G31977 NA non-coding upstream 111625 277601 ~ 278285 (+)
G31976 NA non-coding upstream 112666 276694 ~ 277244 (+)
G32003 NA non-coding downstream 1696 396160 ~ 397786 (+)
LOC122346098 NA non-coding downstream 4357 398821 ~ 402380 (+)
G32024 NA non-coding downstream 79867 474331 ~ 474857 (+)
G32026 NA non-coding downstream 91539 486003 ~ 486240 (+)
G32032 NA non-coding downstream 103227 497691 ~ 498900 (+)
idua idua,LOC107572256,LOC107750302,LOC107723292 other upstream 6451 367792 ~ 383459 (+)
G32004 LOC107725159,LOC107594583,LOC107704910,LOC107667568 other downstream 8109 402573 ~ 407661 (+)
susd1 susd1,LOC107594557,LOC107704917,LOC107572260,LOC107667560 other downstream 24778 419242 ~ 431465 (+)
LOC122346012 cunh9orf84,LOC107704297 other downstream 38315 432779 ~ 447486 (+)
tal2 tal2,LOC107594599,LOC107725114,LOC107723303,LOC107667406 other downstream 55704 450168 ~ 451365 (+)
G32277 NA other downstream 660729 1055193 ~ 1057153 (+)

Expression


Co-expression Network