G33453


Basic Information

Item Value
gene id G33453
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 5859290 ~ 5880529 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU49269
TCACTTTATTATGGCTCAGTTTCTGAAGTGAACAAAAACCCTGGAGCAACAAACGAAGCTCAAAAggataaattaagtttttaaaaaataaagaacacgTTTTATTCTTAACCACAGGGACAGCAATGACGTGAACGAGTGGAAGGAGGTTCATCTAAACGACTACGAACACTCGAAGGAGGTGGGGTTTAACACTGAGCTGGAGCTGCACTAACCTGATCGGGCTGGACTAGAAGTAGagaggaaataaatgaaaacactgaaatgaaagCACAATATGAGGAACTATCTACACAAACCAAAAAACGTTTAAATGATCACAAACACAGTATCAGTATCTGCTGGTGGAGATTGTTCATCTGCagcatattgaaaaaaaatactttgaccTCCAAGTAACTGATGCAATATAAGCTTAAGTTTACTTAACATTTCTTCACTTTTTTATGCATACTAGAGGTCAACCAATGGGTTTTTAGGGCTGATGccgatatatatagatatagatatatatatacatcctcactttttttatgcatactAGAGGTCAaccaatgtgtttttttagggCTGATgcttagatatatatatatatatataaaacccgTATTTTATACATACCTGGCATAAAAAcgaatataaatgtgaaaatgaagaataataagggctttaaaaaaagctctctttaaatgcatttaaataactttatcTGCAAATCGGTTTTGAAACTCGATAAccataaaaatgcttaatatcaACACCGATAATCGGTCGACCCCAATGCGCACtgtaaatctgaatattatAGCCACCAGATTTATCCAACAGAGAAAAGGGCATTCACTTTGGACATAAATGAAATacgatgttttttttcattaatagaTAATTTGACATctttataattatgtttattgtaTCTGTACCTACACTAGCCCTACCTGACCGCGTCAACAGAACATTTTgtacaatagattttttttttattattattacacattatgtttaactgacataaaaaaaaaaaaaaaaaaaaatctaccaaATGTTTGAATATGAAGAGGTAAAATTAGTCAGAATAGTGCAGAATAGTCTTTTCCGCTCAAATCCTTCTCCATctagtcaaacacacacaggtccacacatacacacatcctTACAAAACCCTTGAGAGCACCTCAGGCTTTATCTTATGGCTTCAAGCCGAACGACACAGACGACGGacaccttaaattaaaaaataaaaacatgcaaatacagcttaaatgaaaaaacaaacaaacaaaaaaaccctgcgACGTACCTAATAAATACCGATTAAATAACACCGGGGTAGCATTACAGGCGGGACTCAGTTGCTGTTCTCTTTGGTGGTTATGGTAACGAGTTGCTTGGCAGCTTTGGCGATGTCATAAGCGCACTGGATGACCTGCTGAGTGACCagctgcacgtccgctgcgggGCTGCTCTCCAGAGGAGACGCTTTCTTACACTCGCTCTGCAGCCGGTTCGCGCTGGACGTTAACAATCGCAAAGAGCTCCTCACCGTCTCGGAGCG
>TU49270
TCACTTTATTATGGCTCAGTTTCTGAAGTGAACAAAAACCCTGGAGCAACAAACGAAGCTCAAAAggataaattaagtttttaaaaaataaagaacacgTTTTATTCTTAACCACAGGGACAGCAATGACGTGAACGAGTGGAAGGAGGTTCATCTAAACGACTACGAACACTCGAAGGAGGTGGGGTTTAACACTGAGCTGGAGCTGCACTAACCTGATCGGGCTGGACTAGAAGTAGagaggaaataaatgaaaacactgaaatgaaagCACAATATGAGGAACTATCTACACAAACCAAAAAACGTTTAAATGATCACAAACACAGTATCAGTATCTGCTGGTGGAGATTGTTCATCTGCagcatattgaaaaaaaatactttgaccTCCAAGTAACTGATGCAATATAAGCTTAAGTTTACTTAACATTTCTTCACTTTTTTATGCATACTAGAGGTCAACCAATGGGTTTTTAGGGCTGATGccgatatatatagatatagatatatatatacatcctcactttttttatgcatactAGAGGTCAaccaatgtgtttttttagggCTGATgcagagatatatatatatctatatatatatatatatatatatatatatatatatatata

Function

GO:

id name namespace
GO:0005886 plasma membrane cellular_component
GO:0071944 cell periphery cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU49269 True 1558 lncRNA 0.37 2 5859290 5860897
TU49270 False 634 lncRNA 0.34 2 5859290 5880529

Neighbor

gene id symbol gene type direction distance location
LOC122346201 tchp,LOC107741236,LOC107752150,LOC107595960 coding upstream 1613 5851966 ~ 5857677 (+)
fam222a fam222a,LOC107752139,LOC107654618,LOC107597290,LOC107741239,LOC107672614,LOC107597291,LOC107580258 coding upstream 54336 5748118 ~ 5804954 (+)
mvk LOC107741241,LOC107672634,LOC107654617 coding upstream 180259 5671285 ~ 5679031 (+)
ube3b ube3b,LOC107654616,LOC107752137,LOC107597296,LOC107595925,LOC107741240,LOC107672623 coding upstream 192463 5653575 ~ 5666827 (+)
acacb NA coding upstream 238590 5595095 ~ 5620700 (+)
ankrd13a ankrd13a,LOC107595961,LOC107597335 coding downstream 4392 5884921 ~ 5894400 (+)
sgsm1a sgsm1,LOC107654621,LOC107752142,LOC107672618 coding downstream 40045 5920574 ~ 5954193 (+)
gatc LOC107752156,LOC107654604,LOC107672604,LOC107741226,LOC107595969 coding downstream 75897 5956426 ~ 5958413 (+)
fcho2 fcho2,LOC107655928,LOC107700925 coding downstream 102619 5983148 ~ 6019840 (+)
tmem174 NA coding downstream 149097 6029626 ~ 6032632 (+)
G33348 NA non-coding upstream 319892 5469072 ~ 5539398 (+)
LOC122346031 NA non-coding upstream 391259 5456097 ~ 5468031 (+)
G33206 ankle2,LOC107729791,LOC107597302,LOC107672626,LOC107741250,LOC107684979,LOC107595914 non-coding upstream 456506 5401315 ~ 5402784 (+)
G33257 NA non-coding upstream 488769 5368434 ~ 5370521 (+)
G33251 NA non-coding upstream 522654 5336349 ~ 5336636 (+)
G33492 NA non-coding downstream 198554 6079083 ~ 6079423 (+)
G33499 NA non-coding downstream 244801 6125330 ~ 6165323 (+)
G33500 NA non-coding downstream 284876 6165405 ~ 6165623 (+)
G33501 NA non-coding downstream 285886 6166415 ~ 6166704 (+)
G33502 NA non-coding downstream 286205 6166734 ~ 6167250 (+)
G33355 kctd10,LOC107595924,LOC106564472,LOC107672630,LOC107597295,LOC107752136 other upstream 209405 5604333 ~ 5649885 (+)
myo1ha myo1ha,myo1h,LOC106585663 other upstream 211243 5625267 ~ 5648047 (+)
fbrsl1 LOC107656817,LOC107600129 other upstream 956887 4644101 ~ 4902403 (+)
G33174 NA other upstream 1236230 4622507 ~ 4623060 (+)
G33015 NA other upstream 1714894 3605186 ~ 4144396 (+)
tnpo1 tnpo1,LOC107700926,LOC107655929,LOC107596175 other downstream 79303 5959832 ~ 5982816 (+)
G33494 foxd1,LOC107598200,LOC107718663,LOC107700903,LOC107596217,LOC107757501 other downstream 206733 6087262 ~ 6088562 (+)
hexb hexb,LOC107718643,LOC107700931,LOC107655935,LOC107570862 other downstream 367266 6247795 ~ 6255340 (+)
G33664 NA other downstream 592818 6473347 ~ 6491986 (+)
dab2ipb dab2ipb,LOC107693836,LOC107710761,LOC107700936,LOC107726296 other downstream 736747 6617276 ~ 6762808 (+)

Expression


Co-expression Network