tnpo1 (tnpo1,LOC107700926,LOC107655929,LOC107596175)


Basic Information

Item Value
gene id tnpo1
gene name tnpo1,LOC107700926,LOC107655929,LOC107596175
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 5959832 ~ 5982816 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043240419.1
GCCGCCGCTAGCCGGGCTCGAAGCCAGCGCTCTTTGGGGTCACATGTAGGGTTTCCCTGCCAAATCCCTCCATCCCGCCGGCGACCGGGCAGGCGCTAGGACCGGCGGGCGGCGCGGCGCGGAGGCTTATCGCCGTCTATGTGCGGTGATCCGGACCAGACCGAGTCCATGTATGTAAGCTAGCCTAGCGTCACCAGCGACACGACGCCCGCGAAACACGCTCGCTTTCGCACGGGTCTGTTCACGGTAAACCCCCGCACGGGCGTCTCCCCGATCTTTCGCTCGATAACAGCCGGTCTTGAAGCTGAAGGTCAAGGTGGAGGCCGTTATTTGATGTGAAAGGGTGTAGATCTGTGCGCctacggagagagagagagagagagagagagagctccaGCCACACAAGATGGAGTGCCAGTGGAAACCCGACGAGCAGGGACTTCAGCAGATCTTACAGCTGCTCAAGGAATCGCAGTCCCCCGACACATCCACGCAAAGATCCGTCCAACAAAAACTCGAGCAGCTCAATCAATACCCGGACTTCAACAACTACCTGATATTTGTGCTCACAAAGCTGAAGACAGAAGACGAGCCCACTCGGTCTCTCAGCGGTCTCATTTTGAAGAACAACGTTAAGGCCCATTACCAGAACTTCCCAAACGGTGTGTCTGACTTCATCAAAAATGAGTGCCTGCAAAACATCGGAGACTCCTCGCCGCTCATTAGAGCCACAGTGGGTATTCTGATCACAACTATAGCCTCTAAAGGGGAGTTACAGAACTGGCCGGAGCTTCTACCTAAACTCTGTTTACTGCTGGACTCAGAGGACTATAACACTTGTGaaGGGGCTTTTGGAGCTCTGCAGAAGATCTGCGAGGACTCTGCTGAGATCCTGGACAGCGACATGCTGGACCGACCGCTCAACGTGATGATCCCCAAGTTTCTGCAGTTCTTCAAGCACAGTAGCCCCAAGATCAGGTCTCATGCCATTGCCTGTGTGAACCAGTTCATCATCAGCAGAACACAGGCCCTGATGTTGCACATAGACCCTTTCATCGAGAACCTGTTCGCACTGGCAGGTGATGAGGAGCCCGAAGTGAGGAAGAATGTGTGCAGAGCTTTAGTCATGCTCTTGGAAGTCAGATTGGACCGTCTCCTTCCTCACATGCACAACATCATCGAGTACATGCTGCAGAGGACACAAGATCAGGATGAAAATGTCGCTCTGGAGGCCTGTGAATTTTGGCTCACGCTCGCCGAGCAGCCTGTGTGTAAAGAGGTTCTGTGCGGACACCTGCCTAAaTTAACACCAGTTCTTGTGAATGGAATGAAGTACTCTGACATTGACATAATCTTGTTGAAGGGTGATGTCGAAGAGGACGAAGCAATCCCGGACAACGAGCAGGACATTCGCCCCAGGTTTCATCGCTCACGCACTGTGGCCCAACAACACGAGGGGGGAGACTCCAtcgaggaagaggaggatgacgAAGATGATTTGGATGATGACGAAACCATCTCCGATTGGAACTTGAGGAAATGTTCTGCTGCTGCGCTAGACGTCCTGGCGAATGTTTTCAGAGACGATTTGCTGCTGCATATTCTCCCTTTATTGAAAGAACTACTGTTTCATCCAGAGTGGCTTATTAAAGAGTCTGGCATACTCGTACTGGGAGCCATCGCTGAAGGCTGTATGCAGGGAATGATCCCTTACTTGCCAGAATTGATTCCTCATTTGGTACAGTGTCTGTCTGACAAGAAGGCGCTGGTTCGATCCATCACTTGCTGGACTCTAAGCCGCTACGCACACTGGGTTGTTAGCCAGCCCCCCGACATCTACCTCAAACCGCTCATGACTGAACTGCTCAAACGGATACTTGACAGCAACAAGCGTGTCCAAGAGGCCGCCTGCAGTGCCTTTGCTACCCTGGAAGAGGAGGCTTGCACTGAGCTGGTGCCGTACCTCGCTTATATTTTGGACACGTTGGTTTTTGCTTTCGGTAAATACCAGCACAAGAACCTTCTCATCCTCTATGACGCCATTGGGACTCTGGCTGACTCTGTGGGTCACCATCTCAACAAACCGGAATATATTCAGATGCTGATGCCTCCATTGATTCAAAAATGGAACCAGCTAAAGGATGAAGATAAAGATCTTTTTCCTTTGCTTGAGTGTCTCTCGTCTGTGGCCACTGCCCTGCAGAGCGGCTTCCTGCCATACTGTGAACCTGTCTACCAGCGCTGTGTCAACCTGGTCCAGAAAACACTCGCTCAGGCCGTGCTCCACCAGACTCAGCCTGAGTTTTACGAAGCTCCTGATAAAGATTTCATGATCGTGGCTCTGGATCTGCTCAGCGGGTTAGCAGAGGGTCTTGGAGGGAACATCGAACAGCTAGTTGCCCGTAGCAACATTCTCACTCTCATGTACCAGTGCATGCAGGATAAGATGCCAGAGGTTCGGCAGAGTTCTTTCGCTCTGTTGGGAGATCTGACCAAAGCCTGCTTCCAGCATGTCAAACCTTGCATCGCTAACTTCATGCCTATCCTAGGCACAAACCTGAATCCGGAGTTGATATCAGTCTGCAACAATGCGACATGGGCCATTGGAGAAATATCCATTCAAATGGGTTCTGAGATGCAGCCGTACGTCCCGATGGTTTTACAGCAGCTCGTGGAGATCATAAACAGACCCAACACACCCAAGACGCTGCTGGAGAATACAGCAATAACAATTGGTCGTCTTGGTTACGTTTGTCCTCAAGAGGTGGCACCCATGCTACAGCAGTTTATAAGACCCTGGTGCACCTCTCTTCGCAATATAAGAGACAATGAAGAGAAAGACTCTGCGTTCAGAGGAATCTGCACCATGATCACGGTCAACCCTGGTGGCGTGGTGCAGgactttatatttttctgtgaCGCTGTAGCATCCTGGATGAACCCAAAAGACGATCTTCGAGAAATGTTCTATAAGATATTGCATGGGTTTAAGAACCAGGTTGGAGACGAGAATTGGAGACGCTTTTCTGACCAGTTTCCTCTTCCACTCAAAGAAAGACTTGCAGCCTTCTATGGGGTGTAGATGTTACCTGATTGAAGAGCTTATTCACTTCGGGAGAGGACGGGAACCTCTGATACCCAGGGCATACGTTGCCCTTTACCTGGGGGGAAGGGTGGTCTAGCAGGGGTGGGAGCCATACGGCCCGCCGGCCCCCTGCAGACGGGGTGGGAGGGAAGTGTTAGCTGAGGCGCTAGTCGACGACACCTCGCCAAGCCAAACCAAAATAGggaagaaagctttttcatcaTGTCATAACAATCAGCCGTGAgggcaaaaaactaaatacgtTAGCGCTCATTCACCAGGGCACTTAATGTAACGGGACATCCAGGGGTTAAAAAAAACGAAGATACGCGTAAACTCTGTAGTGTTGCACTCCTGAATTCACGGGAAAGTGCATGGAGAaagcttcttaaaaaaaaccccatttatttcttttctggACCGTACCGTTTAGAGGGGTGGGTGTGACATAAATCTCAACCTGGACGCAAAGCGCAAGTCCTATGCATGGGGTGATGTAGGGTATAGCTCGACCGCATGAGAGTGTGCAGACCGTGTTTCGTGCGCCAGCTACGCACAGCAGTAGACGGCAAACGTTTAAAGACAGTAAATGCTAAAAACGTACCGTATTTTAGGGGCTCCGTCTAAAACGGTAACGCAGCGTAACTCTAGAAATGTAAGTCCTCTCATATCATCGATAGTGAAGGGTTTTGAAGGAGTAAAACtctcaatcattttattttttactttatatatatatatatatatatatatatatatatatatatataaatatatataattcatcatGGTAAATTAAGTTAGCATGCACAAAGTGAGAGGGAACACGGCAAGGATGTCTGAAACTGTTGCTCCGTACGAGGCTTTATCGTTCCTCACTTCCTGATCGACATGGATCCAAACGAGTGAACCctaaacacacattttgttcGATTTTTGAGACGCCGgcgatttctttctttctttttttgcttcgTTTGCTCAGAGCATGATTTTTTTGAAGATGCTTGTGATATCTCTTTTGACCGATCGGGTTAATCTGGATGTTTAGTCGTTTGATTTTTGTGCATGTCGGTGGCCCAGTGAGCGATCCGTTTCTCTAGCACCCCTCACACAGACTAGTTTCAACAACGCGTTTTTCTTCCACACATACACGACGGGTGACGCGTTTTCCATCCACGTATTGCTTTTGTGACTTTAGTTTCGTTACCCCCGCatgaagtttttaaaaagaaacgcCCCATGTTGTGTCGTGTATGATCCTGGACAGTTCAGTGCTCGTGGAGGCAGTGTTTGTGTCCCCTCGTGTGAATATTAGCGAGCCTTAAAATGCCCGAACGTATCCCAGGGTGCGAGGATGTCGGTATCAAACACGACGATGTTCGCACTCGCCTGGAAGCCAACGGTTCTTTCGAGTCCCGAGTTCCGGATTCGAACCCGAAGCCGCCGAGAGGTCAAAGCCGCGGGATATTGTCAGGTGTTTGTGAGTCCGTGTTGTGCTGGTGTATTTCTGCAATGTCTTCTTATTTTCTCGGGTTCGTCTGTCACATTCcagctgttttacatttaagagaagtcagatttttttattcgattttttttttttctgactggGAAAAAAACCCCGAAAAGAACAAAGAGACGAGATGTAGGCAGATATTATGAATGTTAAGTGTGTCGTCTTACACTTATGAATGCTGCTATGTGTTGTAATTTTCTACTTGAATATTTTACGTTGTAGAGACCTCAGGAGGTATGtttactgttgtgtttttttttgtttgtttgtttttatttattattttttttttatgtatgccTTTCCCTGCTGTTCAGGCTCCCGTGTTTCATAATAATAGAGCAATTAACTGTAATCCATTCAGCTGCTGGTAAATATCCTTTCTAACAGGCATATTTTTGTCAATATGTCTCCTTgtaaaagaatgtaaaaaaattttttttgtaatttagagGAGATATCCGATAGTAGACACTCAATAGGATACTTCACGTAGGGATAACATGGAAGTAACTGGCCCTTCATGTATGTgaacattcattatttatgaGATATAAATGCAGTGTATATACTGTAACGCCTTGAAGTTAAacttgagttgttgttttttttgaggGGGTCGGGGGAATGAATAAGGCCACGAAACTCGGAGATTGCACAGTAATGAATCTAATGGTTTTACCTTTTTAACGATTTTAATTTTTCGGctcgttttcttttttgtgaagtacaaaatgtaaaaaaaaaaaaaaaaatgcaagtgttTTGTCCCCGCCCCAGACCGCTTGTATAGTTATATATGTGTGgaaatgaagaaaatgtaataacGAAGTCAAACTTTGCTCAAAAGCTCCCTTTTCTGGTCCGAGAGCGATTTAATTTATagcgatttttctttttttcgactttttattttataacctGATTTTGAACGAAAGATTAAAATACAGAAAGTGATCATTTTTAGGGGCCACCAGATATTTTGGATCATGCAAAGAATATATATTGTACTGTAGAAATTTTGTAATGATATTTGTATGACATTGTTATGGACGTGAGTTTGTTTCACTGCTTGGATCTGTGCATTGGTAAGaataaacacttttcaaaaATC
>XR_006251052.1
GCCGCTAGCCGGGCTCGAAGCCAGCGCTCTTTGGGGTCACATGTAGGGTTTCCCTGCCAAATCCCTCCATCCCGCCGGCGACCGGGCAGGCGCTAGGACCGGCGGGCGGCGCGGCGCGGAGGCTTATCGCCGTCTATGTGCGGTGATCCGGACCAGACCGAGTCCATGTATGTAAGCTAGCCTAGCGTCACCAGCGACACGACGCCCGCGAAACACGCTCGCTTTCGCACGGGTCTGTTCACGGTAAACCCCCGCACGGGCGTCTCCCCGATCTTTCGCTCGATAACAGCCGGTCTTGAAGCTGAAGGTCAAGGTGGAGGCCGTTATTTGATGTGAAAGGGTGTAGATCTGTGCGCctacggagagagagagagagagagagagagagctccaGCCACACAAGATGGAGTGCCAGTGGAAACCCGACGAGCAGGGACTTCAGCAGATCTTACAGCTGCTCAAGGAATCGCAGTCCCCCGACACATCCACGCAAAGATCCGTCCAACAAAAACTCGAGCAGCTCAATCAATACCCGGACTTCAACAACTACCTGATATTTGTGCTCACAAAGCTGAAGACAGAAGACGAGCCCACTCGGTCTCTCAGCGGTCTCATTTTGAAGAACAACGTTAAGGCCCATTACCAGAACTTCCCAAACGGTGTGTCTGACTTCATCAAAAATGAGTGCCTGCAAAACATCGGAGACTCCTCGCCGCTCATTAGAGCCACAGTGGGTATTCTGATCACAACTATAGCCTCTAAAGGGGAGTTACAGAACTGGCCGGAGCTTCTACCTAAACTCTGTTTACTGCTGGACTCAGAGGACTATAACACTTGTGaaGGGGCTTTTGGAGCTCTGCAGAAGATCTGCGAGGACTCTGCTGAGATCCTGGACAGCGACATGCTGGACCGACCGCTCAACGTGATGATCCCCAAGTTTCTGCAGTTCTTCAAGCACAGTAGCCCCAAGATCAGGTCTCATGCCATTGCCTGTGTGAACCAGTTCATCATCAGCAGAACACAGGCCCTGATGTTGCACATAGACCCTTTCATCGAGAACCTGTTCGCACTGGCAGGTGATGAGGAGCCCGAAGTGAGGAAGAATGTGTGCAGAGCTTTAGTCATGCTCTTGGAAGTCAGATTGGACCGTCTCCTTCCTCACATGCACAACATCATCGAGTACATGCTGCAGAGGACACAAGATCAGGATGAAAATGTCGCTCTGGAGGCCTGTGAATTTTGGCTCACGCTCGCCGAGCAGCCTGTGTGTAAAGAGGTTCTGTGCGGACACCTGCCTAAaTTAACACCAGTTCTTGTGAATGGAATGAAGTACTCTGACATTGACATAATCTTGTTGAAGGGTGATGTCGAAGAGGACGAAGCAATCCCGGACAACGAGCAGGACATTCGCCCCAGGTTTCATCGCTCACGCACTGTGGCCCAACAACACGAGGGGGGAGACTCCAtcgaggaagaggaggatgacgAAGATGATTTGGATGATGACGAAACCATCTCCGATTGGAACTTGAGGAAATGTTCTGCTGCTGCGCTAGACGTCCTGGCGAATGTTTTCAGAGACGATTTGCTGCTGCATATTCTCCCTTTATTGAAAGAACTACTGTTTCATCCAGAGTGGCTTATTAAAGAGTCTGGCATACTCGTACTGGGAGCCATCGCTGAAGGCTGTATGCAGGGAATGATCCCTTACTTGCCAGAATTGATTCCTCATTTGGTACAGTGTCTGTCTGACAAGAAGGCGCTGGTTCGATCCATCACTTGCTGGACTCTAAGCCGCTACGCACACTGGGTTGTTAGCCAGCCCCCCGACATCTACCTCAAACCGCTCATGACTGAACTGCTCAAACGGATACTTGACAGCAACAAGCGTGTCCAAGAGGCCGCCTGCAGTGCCTTTGCTACCCTGGAAGAGGAGGCTTGCACTGAGCTGGTGCCGTACCTCGCTTATATTTTGGACACGTTGGTTTTTGCTTTCGGTAAATACCAGCACAAGAACCTTCTCATCCTCTATGACGCCATTGGGACTCTGGCTGACTCTGTGGGTCACCATCTCAACAAACCGGAATATATTCAGATGCTGATGCCTCCATTGATTCAAAAATGGAACCAGCTAAAGGATGAAGATAAAGATCTTTTTCCTTTGCTTGAGTGTCTCTCGTCTGTGGCCACTGCCCTGCAGAGCGGCTTCCTGCCATACTGTGAACCTGTCTACCAGCGCTGTGTCAACCTGGTCCAGAAAACACTCGCTCAGGCCGTGCTCCACCAGACTCAGCCTGAGTTTTACGAAGCTCCTGATAAAGATTTCATGATCGTGGCTCTGGATCTGCTCAGCGGGTTAGCAGAGGGTCTTGGAGGGAACATCGAACAGCTAGTTGCCCGTAGCAACATTCTCACTCTCATGTACCAGTGCATGCAGGATAAGATGCCAGAGGTTCGGCAGAGTTCTTTCGCTCTGTTGGGAGATCTGACCAAAGCCTGCTTCCAGCATGTCAAACCTTGCATCGCTAACTTCATGCCTATCCTAGGCACAAACCTGAATCCGGAGTTGATATCAGTCTGCAACAATGCGACATGGGCCATTGGAGAAATATCCATTCAAATGGGTTCTGAGATGCAGCCGTACGTCCCGATGGTTTTACAGCAGCTCGTGGAGATCATAAACAGACCCAACACACCCAAGACGCTGCTGGAGAATACAGGTGCACCTCTCTTCGCAATATAAGAGACAATGAAGAGAAAGACTCTGCGTTCAGAGGAATCTGCACCATGATCACGGTCAACCCTGGTGGCGTGGTGCAGgactttatatttttctgtgaCGCTGTAGCATCCTGGATGAACCCAAAAGACGATCTTCGAGAAATGTTCTATAAG

Function

symbol description
tnpo1 Predicted to enable nuclear import signal receptor activity and nuclear localization sequence binding activity. Acts upstream of or within smoothened signaling pathway and somite development. Predicted to be active in cytoplasm and nucleus. Orthologous to human TNPO1 (transportin 1).

NR:

description
PREDICTED: transportin-1

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
K18752 TNPO1, IPO2, KPNB2; transportin-1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043240419.1 True 5718 mRNA 0.46 24 5959832 5982816
XR_006251052.1 False 2895 transcript 0.52 21 5959835 5978584

Neighbor

gene id symbol gene type direction distance location
gatc LOC107752156,LOC107654604,LOC107672604,LOC107741226,LOC107595969 coding upstream 1419 5956426 ~ 5958413 (+)
sgsm1a sgsm1,LOC107654621,LOC107752142,LOC107672618 coding upstream 5639 5920574 ~ 5954193 (+)
ankrd13a ankrd13a,LOC107595961,LOC107597335 coding upstream 65432 5884921 ~ 5894400 (+)
LOC122346201 tchp,LOC107741236,LOC107752150,LOC107595960 coding upstream 102155 5851966 ~ 5857677 (+)
fam222a fam222a,LOC107752139,LOC107654618,LOC107597290,LOC107741239,LOC107672614,LOC107597291,LOC107580258 coding upstream 154878 5748118 ~ 5804954 (+)
fcho2 fcho2,LOC107655928,LOC107700925 coding downstream 332 5983148 ~ 6019840 (+)
tmem174 NA coding downstream 46810 6029626 ~ 6032632 (+)
btf3 btf3,LOC107655933 coding downstream 109431 6092247 ~ 6096016 (+)
arhgef28a arhgef28,LOC107718644,LOC107596821,LOC107757522 coding downstream 122979 6105795 ~ 6162485 (+)
fibcd1b fibcd1,LOC107739453,LOC108428067,LOC107693814,LOC107596897,LOC105015243,LOC107700935 coding downstream 539720 6522536 ~ 6591580 (+)
G33471 NA non-coding upstream 62466 5863332 ~ 5897366 (+)
G33453 NA non-coding upstream 79303 5859290 ~ 5880529 (+)
G33454 NA non-coding upstream 89322 5817420 ~ 5870510 (+)
G33348 NA non-coding upstream 420434 5469072 ~ 5539398 (+)
LOC122346031 NA non-coding upstream 491801 5456097 ~ 5468031 (+)
G33492 NA non-coding downstream 96267 6079083 ~ 6079423 (+)
G33499 NA non-coding downstream 142514 6125330 ~ 6165323 (+)
G33500 NA non-coding downstream 182589 6165405 ~ 6165623 (+)
G33501 NA non-coding downstream 183599 6166415 ~ 6166704 (+)
G33502 NA non-coding downstream 183918 6166734 ~ 6167250 (+)
G33355 kctd10,LOC107595924,LOC106564472,LOC107672630,LOC107597295,LOC107752136 other upstream 309947 5604333 ~ 5649885 (+)
myo1ha myo1ha,myo1h,LOC106585663 other upstream 311785 5625267 ~ 5648047 (+)
fbrsl1 LOC107656817,LOC107600129 other upstream 1057429 4644101 ~ 4902403 (+)
G33174 NA other upstream 1336772 4622507 ~ 4623060 (+)
G33015 NA other upstream 1815436 3605186 ~ 4144396 (+)
G33494 foxd1,LOC107598200,LOC107718663,LOC107700903,LOC107596217,LOC107757501 other downstream 104446 6087262 ~ 6088562 (+)
hexb hexb,LOC107718643,LOC107700931,LOC107655935,LOC107570862 other downstream 264979 6247795 ~ 6255340 (+)
G33664 NA other downstream 490531 6473347 ~ 6491986 (+)
dab2ipb dab2ipb,LOC107693836,LOC107710761,LOC107700936,LOC107726296 other downstream 634460 6617276 ~ 6762808 (+)
si:dkey-34e4.1 si:dkey-34e4.1,LOC107700938,LOC107596916,LOC107710760,LOC107587412 other downstream 810549 6793365 ~ 6825366 (+)

Expression


Co-expression Network