scarf2 (scarf2,LOC107704405,LOC107730837,LOC107566488,LOC107750756,LOC107667270,LOC107599162)


Basic Information

Item Value
gene id scarf2
gene name scarf2,LOC107704405,LOC107730837,LOC107566488,LOC107750756,LOC107667270,LOC107599162
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 1076462 ~ 1101483 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043238982.1
GAAACCGCTGCACGCCGAAGAGAGCAGGCTCGCCGAATTCCCAAGAGCCAGAGATAGGATCACTAATTAGGAATTTCCCCTTCAGAAAAGAGAACAACGAGCCGTTTTAAAGTCCCcgtttctttttcaaaatggaCGCGCGTGAAGTTTTGCGGAGCTTTTTTTCTTGAAGCGGCGCATCGTCGCGGAAAATCCGCATTTTGGAAATAATAGCGGCAAATCGGGGGCATCGCGGCGTCCGACGTTTCCAGCTATGCGCCAGTTACATCCACCAGTGCTCGGAGCGCGCGACAGAAGCAGAAGTTCTCCTCAGGAACTGGGGCTGGACGGAGGGAATAACTGTTTGGTTTTATAACTTCTGTGCGccctctcctcctcttttctCTTCCCTGCCTCAGCCTTTGGAGTCCGAAAGCGAGCGGATAAACGGTTTGTGCGGATAAAGTAACTTTCGACCGACCGAAGTCGACGGTTTTCAGACTTACGAGATACAGAATAACCCATTCGAACTCCTAGAGATTGTAAAGTAAAGGAATGCTGAGCAGAAGAGGCGCATGGAGATATGCTGTTTCTTCTACCATGGATCTAAAGGGCACTTTAGCGTTATTAGTGCTGTTGCTTCTGTGCTTGTGCCCCGTTTTCGGTCAAGAACTCAGTCCAAAGGGTAGGAACGTTTGCAAAGTTCCGGGGTCGCCGGGGTTCATATGTTGCAGCGGATGGGCGCAGCAAGGCGAGGACTGTCTAACGCCTCTCTGCGAAGGTAACTTCACTTGTAATGAGAATGAGGTGTGTGTCCGACCAAATGAATGCCGCTGTCGTCATGGATATTTTGGGGCAAGTTGTGACACAAAGTGTCCCGCTCAGTACTGGGGTCCGGACTGCAAGGGCATGTGCACGTGTCACCCTAACGGTAAATGCGATGACGTGACCGGGAAGTGCACGTGCTACCCAAACCGCTGGGGTGAGAACTGCGAGAAGCCCTGCAACTGTCAGAAAGGGAAATGTGACCAGGAGACGGGCAAATGCACCTGCCACGCCGCTTACTGGGGACCTCAGTGCAACAACAACTGCTACTGCAGCATCAACTCGGTGTGCGACCAGAACACGGGCCGGTGCATCTGCAACCCCGGCTGGTTCGGACGGAACTGCGGTGCTCAGTGCGTGTGCAACAACTCGCCTTGTGAGCAGTTTACGGGCCGATGTCAATGCAGGGAGAGACTCTGGGGTCAGCGCTGCGAACGTCACTGCCAGTGCGCCAACGGAAAGTGTAATCCTGTGGATGGATCGTGTACCTGTAAACCCGGATACAGAGGAAAGCTATGCCGGGAGCCGTGTCCAGCTGGATTCTACGGACAGAACTGCAAAAACAAGTGTGGCCACTGTAAAGGTCAGCAGCCCTGTAAGGTGACGGAGGGTCACTGTGAGACGTGTGCGAGTGGCTGGAACGGGACAAAATGTGATCAGCTTTGTGCAGAGGGTTACTTTGGAGAAAACTGTAAGGATCAGTGTCCGCCGTGCAAAGATGGTCATTTCTGCAACCGCATCAACGGGAAATGTTCCCACTGCAATCCCGGCTGGATTGGAGATCGCTGTGAGGTGCGCTGTCCTAACGGCACTTATGGAGAAAACTGTGAAAAAGACTGCAGCCATTGTTTTAATGGAGACTGCCATTTTGCCACAGGAGAGTGTCTCTGTGACCCTGGCTTCTACGGGACATACTGCAACCTGACCTGTGAGTTGGGTCAGTTTGGAGTGAACTGTGCCCAGGTCTGTCCGTGTCACGATAAGAACTGCAACCCAGTGTCAGGGGCCTGCAACCTATATCCTAATCAGCGGATGGGAGTAATAGCTGCGGCAACGCTGGTGACGTTTCTGCTGGTGGTTCTTCTGTCTCTGCTGTGCTGCTGCTTCCTCTGTAGCAACAAAGACAACCGCAACCCTGACCAGGAAAACTCCACCAACAGCAAGAAGGCCAAAATAATCCTCTGTGGTGGATTCAGTCGAATCAGCACCAAACTCCCCAGAATCCCTCTGAGGAGACAGAAACTACCCAAAGTTGTTGTCACCCACCACGATCCTGAGAACACCTTCAACAGCATTATCGAGCCTCCCTCAGTGGTGGACCAACCTTCTCCATCATGGTCATCCCAGGAGTCCTTCTCTTCCTTCGAGACGAGTGAAGACGGGCCTGTTTACTGCATACCCCATGAAGatacTATGAATGAGAGCTCTGACAAGCGAAATTCTAGCGCTGTTCAAGAAACAACACTGAACGCCAATGATGAGGACGCAGGAGAGTACACATCTCTCAAAGACACAAGAGAAAATACAAAGCAGTATGTTAGCGATGGAAGTGAGCAGCCTCTTCTGAAGTCTTCAGACAGCGAAGGCTCCACCAGTGGTTCTGAGTCAACCATAGGAGCTGTTTACGCTCATATCGCCCGCCTTTCCAAACACTCCAAAGAGGAGGAGGACAACACCTCACCagagaagacaaaagaaaagACGAAACCTCGTCCTCCAGACCCTTCCACTAAACCGAAGGTGTCCTGGATCCACGGAACATCCGGAACCAACCCAACAGAACAAAGCCAGACTCCATCACCACaaaaagagaagaggaagaacAACTCAGAAGCTTCCGGAAAGGTCGAAGAGAAGCAGCGGTCAAAGGAGAAGTCAAGCAAGAACCGTGAAAAGCATCAGGACGGTAAGAAAGCAGATGGACCTGAATCACCAAGCAAAAGCAAATCTCACAAAGCTTCAGAAACCATCGAGCACCTCAATGGAACATTTCAGAATGCCCTGAAGAAGATCGGAAACTTCCACTCAGACAAGAAAACAAACGAAGCCAACAAAGATCCACCTAAAAGCCCAAAGATCATGCACCCACACATGAACTCTGAGGCCGCCACGCTGCTTGCAGCTCAGCTGAAGGAAAAGACCCAAAGCCTAAATCGGAACGAGGGTCTCACAGTGGGAATCAAACCCAACGGTGTATCAACACCTCAAGCCAACCGAGAGAAACCCACCCCGCCTCAAAAGACCAAGCGCTCCGCAACTGGGACCAACAAGCCCCTTCTTCCCACCTCCAGCAACCTCCAGAAGATGGTGGCTCCTATTTCAGACTCTACACCTGAACCCAAAAGCCCAGAAAAGCTAGGGGTTAATGGGACCAGAGTTGAAGGAGACGCCACACCAAAGAAAACGCCCATCAAAAAACCACCGAGGAAGAAAGGAAAGGAGGGAACACTAGAGACGGAAGGCAAAACCACTCCAAAGACGGCCATTATGCCACCTCAGACTGTCAAGTAGATCTTTGATCACATTGGTGCGTCCGTTTTTGAGaatataaacatacttttttttttttattcgttaaACATTATATAGGAATTGGGTggatttcttttgtttgtttgttttaaacggACGAGCTGCTTATaggatttaatattttgaaggaTTGTGGTTCTCATTAACTCTTTAAAAACCAGGAATCGGGAACAACACAGTGGCTTGTGTACAGTATTATAAAGGAAGAGTAAatgaatttaatgtaataagCTCATCTTGTATGCTCTCAGTTTTACATATGCATCACTTCGTGTCCAAAGAGAGATTTTCCAATGCTATCATAATTGTGTGATCAGCAGGTTTTTGTGTCTGATAGGTTGTATTTAGCACTGTATTAATAGGTGTAAAGAATGAACCAAAGGTACTTTAAAGGTACAGAAAGAATGATCCCAATATTAATTTTCTCTCAGGCTATAACAGTATATTAAATATCTTGCAAATGATGTCATGAAGGAAATTCTGCTTGGGTTCTAAGACGTGTCATCATTACTTCACCTCGCATCATGCTTTTTAAGCTTAAAATGATATTTCTTGCAAGTCAACGGGGATATATTTTCTTTACGTTGAAGCTTAGCACTAGTTTTTCCTTTGCTCATAAAGTCCACACAGTtggtaatgcatttttttctggcCAGATAAAGACCCCATATAATGAaaactttgtttgttttttgtttgttttggctttTAGCCTGTCTACGTGGGCGTTcgtgctgtttatatattattatagatcTAAAACTTCAGGAATTAAGTACAGTTATACAACTTTTCAGCCTCTGGGATGGATCTTGTACATCGTGGCGTATTCaaattctcaaaataaaattcagtCCTTGCTTAACTTCCTGAAAATAGGAGAAACatataatttgcattaaaaatcagCACTTAAATTATTCTTAAACTCTTTTAATGCCTGCTCACATGCTACTCTGTACATGACTGATTGTGTCTATATAGCATTACTACAGCATTACCATAGTGCTCGTTcgcattttatgaaaataactgctttacattatttatgcaACCTACAAACTTTTACCATCGAATATTATTTGTCCTTCCATAGAAACAACGTAATGCTTTAAAGATGCCAGTATAAAGCAACCTAGCAGCCTTGACTATATAGTTGCAGGAAGTTCAATGCAatcaacaaatattattttttccgTGGCTTAAATCAACACAAGAATGGCTCATGACTGCATcgaatgtgtttattttttaagctcACTATCAGAAACACCCTATAGCACTTGCAGATTCGTTTTTCAGGATGACATCCAACAGAAcgaattcataaaaaaaaactggatggtTATGCTTTGACAAAGAACCAAGGGTTAAATGTTCAATCTGGGTCTGCGCTATTTTTAAGCGAGTTCACAAAAAAGCTTTTGGATTGTGGTGTACAGTAACTGCTATTCCCTTATATGGTACCTTATATTTTTCTACatgttaagatattttgtaataatatttttacccTCATTTGTAAGCTGTGCTTATACAACTTAtatctttgctttttttttattttatgtgtgtcaAATGAACTGGTTTTCAattttgataacattttttatgtgcAAGCATCAGGTACACTTGGACCCAATGTTTAAATGTCTTTCTGTTTGCTCTCCAAAtatctttttcacatttctctgtggatgttattgttttttaatgaacgATAAACTGCATGATGCAGAGTTCAGTGAGAGATCGCTGAGAGATATCTATGCATGTTACCCCATGTTCTGTTTTTGCTGTTCTGTTACTTGGGACCTATGACAAAAAACgacttttcatgtttttgcacGAATCCAGAACATTACCATCTGCGGTATATGACTTTATGGGAGTAtgaataacagatttttttctacTCTGACTTTGGGGTGAGCTTTGACTAGAGCTCAGTGCTACAATATGAAGCATTATCAGTAACGCGCATTATCTTCATTCATTTTGTCCtgatttttgcctttttatgttGTTGATGTGTGGTTGTTCAGTTACcgtatttgaaataaaagcaaacctGTAGCTCATGAATCTAAA

Function

symbol description
scarf2 Human ortholog(s) of this gene implicated in Van den Ende-Gupta syndrome. Orthologous to human SCARF2 (scavenger receptor class F member 2).

NR:

description
PREDICTED: scavenger receptor class F member 2

GO: NA

KEGG:

id description
K24319 SCARF2; scavenger receptor class F member 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043238982.1 True 5427 mRNA 0.45 11 1076462 1101483

Neighbor

gene id symbol gene type direction distance location
hscb LOC107704372,LOC107751426,LOC107723301,LOC107667639,LOC107550281,LOC107567452 coding upstream 410591 661601 ~ 665871 (+)
LOC122344993 LOC107723300,LOC107667312,LOC107550274 coding upstream 429831 644255 ~ 646631 (+)
LOC122344762 gstt2,LOC107667312,LOC107723300,LOC107723302 coding upstream 432445 642273 ~ 644017 (+)
slc2a11b slc2a11b,LOC107653192,LOC107550296,LOC107751419 coding upstream 434635 632469 ~ 641827 (+)
LOC122345393 NA coding upstream 602527 472993 ~ 473935 (+)
zgc:112294 zgc:112294,LOC107750763,LOC107667255,LOC107566480,LOC107599152 coding downstream 14656 1116139 ~ 1119635 (+)
fbxo21 fbxo21,LOC107726726,LOC107750754 coding downstream 155589 1257072 ~ 1264944 (+)
tesca tesc,tesca,LOC107726727,LOC107667246,LOC107750755,LOC107566489 coding downstream 164594 1266077 ~ 1271257 (+)
spring1 zgc:110063,LOC107667499,LOC107755806,LOC107599146,LOC107704950 coding downstream 206080 1307563 ~ 1310993 (+)
rfc5 rfc5,LOC107716544,LOC107668751,LOC107704514 coding downstream 393445 1494928 ~ 1501851 (+)
G32281 NA non-coding upstream 25848 1050389 ~ 1050614 (+)
G32280 NA non-coding upstream 26110 1050108 ~ 1050352 (+)
G32237 NA non-coding upstream 372274 703765 ~ 704188 (+)
G32234 NA non-coding upstream 376121 700105 ~ 700341 (+)
LOC122345815 NA non-coding upstream 386426 679630 ~ 690036 (+)
LOC122346206 NA non-coding downstream 187817 1289300 ~ 1293600 (+)
G32344 NA non-coding downstream 197768 1299251 ~ 1301855 (+)
G32351 NA non-coding downstream 236640 1338123 ~ 1341194 (+)
G32361 lrrc74b,LOC107599620,LOC107755819,LOC107667596,LOC107599161 non-coding downstream 241045 1342528 ~ 1345039 (+)
G32390 NA non-coding downstream 310240 1411723 ~ 1418486 (+)
G32277 NA other upstream 19309 1055193 ~ 1057153 (+)
tal2 tal2,LOC107594599,LOC107725114,LOC107723303,LOC107667406 other upstream 625097 450168 ~ 451365 (+)
LOC122346012 cunh9orf84,LOC107704297 other upstream 628976 432779 ~ 447486 (+)
susd1 susd1,LOC107594557,LOC107704917,LOC107572260,LOC107667560 other upstream 644997 419242 ~ 431465 (+)
G32004 LOC107725159,LOC107594583,LOC107704910,LOC107667568 other upstream 668801 402573 ~ 407661 (+)
selenoe fep15,LOC107667262,LOC107566481,LOC107750764,LOC108443918,LOC101066385,LOC105931211,LOC100703742 other downstream 10781 1112264 ~ 1115405 (+)
ccl19a.2 ccl19a.2,LOC107704660,LOC107755825,LOC107599642,LOC107668736,LOC107599131,LOC107741495 other downstream 690345 1791828 ~ 1793266 (+)
G32611 prrc2b,LOC107704672 other downstream 721171 1822654 ~ 1826114 (+)
G32620 prrc2b,LOC107704672,LOC107562325 other downstream 733665 1835148 ~ 1843013 (+)
LOC122346050 nutf2,LOC107726276,LOC107692933,LOC107733565 other downstream 799144 1900627 ~ 1905499 (+)

Expression


Co-expression Network