G26244


Basic Information

Item Value
gene id G26244
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 3679721 ~ 3681358 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU29630
TGTTCAGGGGGATAGGACACATTGCTTTTAATTTAAAAATAAAGTTTTTAGCCTTAAATTAACAATGGATCTATATTCCAAGACAAAGGAGTGTAATGCCTACTGCACAAAACAACTGAAGACAAGGATCTGTAATGCTATACAGCTAAAGGAATCTCCACAAAACATTTTTTAAAATAATCTAGGTGATTCAAACGAGGCATCTCTTTTGACACTCTTTAAATGGAGCGCTTCGAGACATTGCCTTCCCTGCCTTAAGTACTATAAAACTCACAAATGAAAAGAGAAAGAAAAAAAAAAAAAAAAAACACATGGATAAGTGCACCACTTCGACCATGACTGGTCACAAGTCACTCTTACCTGTGTTGTCATAGTAATGCAACTAAGAGTAGAAAAAGTAGAGAAAATCTGGCTTCAACATATATAAATACTTCTTTTTACAAACAAAGTTAATCCAGAACTAATATGCAGTTAGGAAACTGGCATTCCTTGCACTTCAACAGAAATATAAATTAAATTAAACAAAATCCAAAGCTGCTGTATCCACCTAAACGTAAGAGTATAAAGCTAGTTTCCTATAAGGTCCCATGTTTACAGTAGATCACACATGAGAGCTGCTCGTACTAAGAAAGACTAGATTCATCCATGAGATTCAGATATTGCAAAGCACTTTAAGACCTACAAAAAAGGTCAGTGGGACGGCGCATCCCCGCTGACTTAAAATTTGTCTGACGGACTAAAGGTCTGTTCATGTGCAGTCAGCCGGTTGGTCTGCGGGGAGGTGATTTTAAAAAAAACAGTTGAAACATTACCGCCACCTGACTGAAGATAGTAGGAGTCCGAGAGCAGTCCAACGCCCCCGCTGAGCCTGAGCCGGTTGTGTGCTGTCCGAACAAACAAACACTCTTACACAAGACATTCCTAGCATTTCATTTCTGGGACTCTCATCTATGCCGCCCGAAGACCGTTCACAGTAGGATCATTTCAGTGAGAATTATTACTCAGCCTGAAGGTCTAAAACTTGATCTTGGTGTTTTTAAAAACAAAGGCTCGGTGGTGGGCATGTCTTTGCAGTTGTCCGATCACGTGATGACGTGTTTGTTTACTCAAAACATTAAGGTGTCTGGTCCAGCCTGTTTTTCTGTTTGTTATGTTGTTAGTGGCGTCGGCCAATTGATCTGTGTGTTGAAGATATTGTTTGTGAGGAGTTTGTGAAGTGCTACTCCATGATGGCTCTGTAGATGACCGGTTCGATGTAGTCCTCCCTATAACGGGAGTTGATCACCCGCTGTCTTTTCGAGTCCTGCTTCACGTCCTTCTCCACAAACACCCCTTTGAAGCGCATGTCCGAC
>TU29631
TGTTCAGGGGGATAGGACACATTGCTTTTAATTTAAAAATAAAGTTTTTAGCCTTAAATTAACAATGGATCTATATTCCAAGACAAAGGAGTGTAATGCCTACTGCACAAAACAACTGAAGACAAGGATCTGTAATGCTATACAGCTAAAGGAATCTCCACAAAACATTTTTTAAAATAATCTAGGTGATTCAAACGAGGCATCTCTTTTGACACTCTTTAAATGGAGCGCTTCGAGACATTGCCTTCCCTGCCTTAAGTACTATAAAACTCACAAATGAAAAGAGAAAGAAGAAAAAAAAAAAAAAAAAAAAAACACATGGATAAGTGCACCACTTCGACCATGACTGGTCACAAGTCACTCTTACCTGTGTTGTCATAGTAATGCAACTAAGAGTAGAAAAAGTAGAGAAAATCTGGCTTCAACATATATAAATACTTCTTTTTACAAACAAAGTTAATCCAGAACTAATATGCAGTTAGGAAACTGGCATTCCTTGCACTTCAACAGAAATATAAATTAAATTAAACAAAATCCAAAGCTGCTGTATCCACCTAAACGTAAGAGTATAAAGCTAGTTTCCTATAAGGTCCCATGTTTACAGTAGATCACACATGAGAGCTGCTCGTACTAAGAAAGACTAGATTCATCCATGAGATTCAGATATTGCAAAGCACTTTAAGACCTACAAAAAAGGTCAGTGGGACGGCGCATCCCCGCTGACTTAAAATTTGTCTGACGGACTAAAGGTCTGTTCATGTGCAGTCAGCCGGTTGGTCTGCGGGGAGGTGATTTTAAAAAAAACAGTTGAAACATTACCGCCACCTGACTGAAGATAGTAGGAGTCCGAGAGCAGTCCAACGCCCCCGCTGAGCCTGAGCCGGTTGTGTGCTGTCCGAACAAACAAACACTCTTACACAAGACATTCCTAGCATTTCATTTCTGGGACTCTCATCTATGCCGCCCGAAGACCGTTCACAGTAGGATCATTTCAGTGAGAATTATTACTCAGCCTGAAGGTCTAAAACTTGATCTTGGTGTTTTTAAAAACAAAGGCTCGGTGGTGGGCATGTCTTTGCAGTTGTCCGATCACGTGATGACGTGTTTGTTTACTCAAAACATTAAGGTGTCTGGTCCAGCCTGTTTTTCTGTTTGTTATGTTGTTAGTGGCGTCGGCCAATTGATCTGTGTGTTGAAGATATTGTTTGTGAGGAGTTTGTGAAGTGCTACTCCATGATGGCTCTGTAGATGACCGGTTCGATGTAGTCCTCCCTATAACGGGAGTTGATCACCCGCTGTCTTTTCGAGTCCTGCTTCACGTCCTTCTCCACAAACACCCCTTTGAAGCGCATGTCCGAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU29630 False 1352 lncRNA 0.49 2 3679721 3681358
TU29631 True 1359 lncRNA 0.41 2 3679721 3681358

Neighbor

gene id symbol gene type direction distance location
CI01000004_03592655_03592917 NA coding upstream 86804 3592655 ~ 3592917 (+)
CI01000004_03550525_03552621 PTGER4C coding upstream 126298 3550329 ~ 3553423 (+)
CI01000004_03504401_03504700 NA coding upstream 174789 3504278 ~ 3504932 (+)
CI01000004_03496175_03497985 DMBX1, DMBX1A coding upstream 181337 3494746 ~ 3498384 (+)
CI01000004_03432787_03433110 NA coding upstream 246267 3432787 ~ 3433454 (+)
CI01000004_03735876_03736152 NA coding downstream 54396 3735754 ~ 3737017 (+)
CI01000004_03814120_03839793 NA coding downstream 132693 3814051 ~ 3839807 (+)
CI01000004_03878083_03909016 NA coding downstream 196661 3878019 ~ 3909309 (+)
CI01000004_03934726_03935639 NA coding downstream 252327 3933685 ~ 3935870 (+)
CI01000004_04048829_04053849 NA coding downstream 364570 4045928 ~ 4054570 (+)
G26263 NA non-coding upstream 2976 3676403 ~ 3676745 (+)
G26359 NA non-coding upstream 6474 3673032 ~ 3673247 (+)
G26354 NA non-coding upstream 12509 3666932 ~ 3667212 (+)
G26349 NA non-coding upstream 23694 3655813 ~ 3656027 (+)
G26233 NA non-coding upstream 90534 3586835 ~ 3589187 (+)
G26362 NA non-coding downstream 20798 3702156 ~ 3702634 (+)
G26390 NA non-coding downstream 119552 3800910 ~ 3802844 (+)
G26416 NA non-coding downstream 159474 3840832 ~ 3842544 (+)
G26492 NA non-coding downstream 260473 3941831 ~ 3942173 (+)
G26493 NA non-coding downstream 260935 3942293 ~ 3943340 (+)
G26245 NA other upstream 157328 3509017 ~ 3522393 (+)
CI01000004_02745885_02768971 NA other upstream 920783 2745885 ~ 2769135 (+)
G25992 NA other upstream 942953 2736536 ~ 2736768 (+)
G25882 NA other upstream 1106672 2548075 ~ 2573049 (+)
G27805 NA other downstream 1691467 5372825 ~ 5373803 (+)
G28165 NA other downstream 2051231 5732589 ~ 5733001 (+)
G28302 NA other downstream 2788670 6470028 ~ 6502087 (+)
CI01000004_06571261_06572539 SEP15 other downstream 2889862 6570771 ~ 6572667 (+)
CI01000004_07654234_07655677 MRPL34 other downstream 3973414 7654234 ~ 7656383 (+)

Expression


Co-expression Network