G27564


Basic Information

Item Value
gene id G27564
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 4517217 ~ 4521614 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU31127
GCTGACATCCAGAACTTCATGACAATGAAGAGGAGGAGTGTGATGAACACACTGATTTGCGGGTGCTTCCAGGCCTGAGGTACGTGACTTGAGTACTCAAACTCCTCAGCAACACCTTGCTTGTACCAGGTCAGGTTGTCAAACAGTGCCACTAGTGACTCATGTTGAGTAAGCTGGCCTGCCATGAACTGTCCAAAGCCTGGAGGAAAGGTGAGTGTAGAGATAAGAAGAGTGACCACTGCCGGATACACCAGTCTTTTTTTTAGCAAAAACTTGTTGATGGTTTTCTGCTTTCTCATAGACTCCACTATGATCCTGTTCAGGTACACAAACAACGCCCCTCCAAAACCAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU31127 True 352 lncRNA 0.51 4 4517217 4521614

Neighbor

gene id symbol gene type direction distance location
CI01000004_04467142_04474270 NA coding downstream 42947 4466766 ~ 4474270 (-)
CI01000004_04438520_04452913 ZFYVE9, ZFYVE9A coding downstream 64264 4437711 ~ 4452953 (-)
CI01000004_04406215_04410740 CDC20 coding downstream 106477 4406215 ~ 4410740 (-)
CI01000004_04375211_04379590 NA coding downstream 137627 4375110 ~ 4379590 (-)
CI01000004_04361874_04362518 NA coding downstream 154501 4361661 ~ 4362716 (-)
CI01000004_04539835_04546982 FAM131A coding upstream 17938 4539552 ~ 4546982 (-)
CI01000004_04557685_04579456 EIF4G1A coding upstream 34839 4556453 ~ 4579456 (-)
CI01000004_04594923_04600816 NA coding upstream 73076 4594690 ~ 4600840 (-)
CI01000004_04615072_04627283 UBXN7 coding upstream 92295 4613909 ~ 4627283 (-)
CI01000004_04630333_04635078 PPP1R7 coding upstream 107669 4629283 ~ 4635078 (-)
G27483 NA non-coding downstream 80711 4436180 ~ 4436506 (-)
G27515 NA non-coding downstream 162180 4354725 ~ 4355037 (-)
G27488 NA non-coding downstream 163102 4353681 ~ 4354115 (-)
G27511 NA non-coding downstream 181781 4335106 ~ 4335436 (-)
G27505 NA non-coding downstream 193867 4323095 ~ 4323350 (-)
G27579 NA non-coding upstream 162930 4684544 ~ 4684745 (-)
CI01000004_04712970_04717937 GRK7, GRK7A non-coding upstream 196618 4712287 ~ 4718671 (-)
G27598 NA non-coding upstream 197215 4718829 ~ 4719096 (-)
G27599 NA non-coding upstream 198067 4719681 ~ 4720243 (-)
G27603 NA non-coding upstream 202918 4724532 ~ 4725105 (-)
G26788 NA other downstream 1241496 3267683 ~ 3275721 (-)
CI01000004_01773383_01774888 INSL5B other downstream 2742276 1772928 ~ 1774942 (-)
G27746 NA other upstream 656613 5178227 ~ 5203724 (-)
CI01000004_05617072_05627369 NA other upstream 1098769 5616644 ~ 5628289 (-)
CI01000004_06539836_06541252 NA other upstream 2013213 6538904 ~ 6541252 (-)
G29388 NA other upstream 2109679 6631293 ~ 6631907 (-)
G29656 NA other upstream 3442750 7964364 ~ 7965500 (-)

Expression


Co-expression Network