Gene
RNA
| Item | Value |
|---|---|
| gene id | G27780 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000004 |
| NCBI id | null |
| chromosome length | 17451736 |
| location | 5248834 ~ 5249065 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU31380 | True | 232 | lncRNA | 0.50 | 1 | 5248834 | 5249065 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000004_05238552_05246750 | TECRL2B | coding | upstream | 1720 | 5237204 ~ 5247114 (+) |
| CI01000004_05227614_05231253 | OLFM3, OLFM3A, OLFM3B | coding | upstream | 16782 | 5227614 ~ 5232052 (+) |
| CI01000004_05154049_05203177 | COL11A1B, COL11A1 | coding | upstream | 45657 | 5154049 ~ 5203177 (+) |
| CI01000004_04924543_04956339 | VAV3B | coding | upstream | 292399 | 4924508 ~ 4956435 (+) |
| CI01000004_04798717_04889650 | ARHGEF4 | coding | upstream | 359184 | 4798717 ~ 4889650 (+) |
| CI01000004_05343381_05353920 | NA | coding | downstream | 94316 | 5343381 ~ 5354231 (+) |
| CI01000004_05389431_05393230 | TMEM56 | coding | downstream | 140305 | 5389370 ~ 5394211 (+) |
| CI01000004_05397192_05402109 | HCCSA.1, RWDD3 | coding | downstream | 148030 | 5397095 ~ 5402109 (+) |
| CI01000004_05454350_05455993 | NA | coding | downstream | 204776 | 5453841 ~ 5455993 (+) |
| CI01000004_05459139_05467673 | PTBP2B, PTBP2 | coding | downstream | 210074 | 5459139 ~ 5468857 (+) |
| G27757 | NA | non-coding | upstream | 28824 | 5219615 ~ 5220010 (+) |
| G27753 | NA | non-coding | upstream | 40174 | 5206848 ~ 5208660 (+) |
| G27388 | NA | non-coding | upstream | 115257 | 5133205 ~ 5133577 (+) |
| G27383 | NA | non-coding | upstream | 122336 | 5108262 ~ 5126498 (+) |
| G27148 | NA | non-coding | upstream | 132255 | 4991403 ~ 5116579 (+) |
| G27782 | NA | non-coding | downstream | 4604 | 5253669 ~ 5254045 (+) |
| G27791 | NA | non-coding | downstream | 15759 | 5264824 ~ 5265316 (+) |
| G27794 | NA | non-coding | downstream | 27047 | 5276112 ~ 5276352 (+) |
| G27801 | NA | non-coding | downstream | 106086 | 5355151 ~ 5357856 (+) |
| G27836 | NA | non-coding | downstream | 120632 | 5369697 ~ 5369945 (+) |
| CI01000004_03550525_03552621 | PTGER4C | other | upstream | 1696388 | 3550329 ~ 3553423 (+) |
| G26245 | NA | other | upstream | 1726441 | 3509017 ~ 3522393 (+) |
| CI01000004_02745885_02768971 | NA | other | upstream | 2489896 | 2745885 ~ 2769135 (+) |
| G25992 | NA | other | upstream | 2512066 | 2736536 ~ 2736768 (+) |
| G25882 | NA | other | upstream | 2675785 | 2548075 ~ 2573049 (+) |
| G27805 | NA | other | downstream | 123760 | 5372825 ~ 5373803 (+) |
| G28165 | NA | other | downstream | 483524 | 5732589 ~ 5733001 (+) |
| G28302 | NA | other | downstream | 1220963 | 6470028 ~ 6502087 (+) |
| CI01000004_06571261_06572539 | SEP15 | other | downstream | 1322155 | 6570771 ~ 6572667 (+) |
| CI01000004_07654234_07655677 | MRPL34 | other | downstream | 2405707 | 7654234 ~ 7656383 (+) |
