G27801


Basic Information

Item Value
gene id G27801
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 5355151 ~ 5357856 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU31403
CATTTTTAAAAAAAATAGTTTATGCTCATTAAATAATTTCAGTCTAGATATAAAACTCTATACACACACAGCAGCTATTACAATGTATTTCTAAAGAAAATAATAAATACGGCTGTTTAATAAACAAATACACTGTTCTATTTATCCATAAAAAATAAAAGCAATGGTCCGATACGTATAACATATCGTGTAGTGTTAGTGTTTCATAGAAACCAGTCCAGTGCTGCACTGCAGGTGTGCTTCGCACACACCGGTCCCTCTCAGCGCAAAAACGGTTACAGTCCAGCTGTACACCCCGTTCTCAGCTCGATCAGCAGAAATTGATTCTTGAGTCTAGACTATGGTTTCCTTGGCCATTGTTTTTTCTCTTCTTGCTCTCTTACAGCACACCACAATCAGAACGATTACAGCAATTACAAAAGCCAGTATAATAAGCGCTGCTCCTCCAATCACAGTCGGTCCATACACTACGGAAAAGAAGAGAGGAATTTTATTCATCGGATTATTACAACGGAGTCTATAATATGTTTTAATGAATTATAGTGTGATTTCAAAACAGCATTTGATAAAGTAGTATAGGAAAGAGCAGTGCACATGCATTATATGGAATGTAATAGAAAAGGATCTGACAGAATTTAAGTTACTGCACAGTTGTTGCTCAAATCCAGCTCATTTAATGGTTGTGGCTAGTTTGTATAAAGGTCAATGATAAATAAGTGTCCACATAATAGAAAAAACCCTTTTAAAAATCTATTTTTAAAAATAAACCAAGTTCATAGAAATCAACTATTTGTATTCTTTGTGGTTTCACTGGTTCGGAAATAAAACATACCATTTTAAACAAAACTTTCAATTTAATGACTTTATAAAATGTTTTTAAAACGATAGATCGATAGTGATATATTTTGAGTTTGAAAACTCCAGGTGCAGAAACAGAGGTTCCCACACAACTGAATGGAGTCAATTGAGCGCAGCTGTCATTGCCTGGTCAGTTTCTGAGTAATGTCAGAGTGTGTCATCCTCCCCTCCTCTACTCGGTTAGCTAACCCTGATCTGGCCTCTTCATGCTTAACAACCTTCCTGTTTTCCATAACACTGGAATTCTAGACAAATAAACCTTTGAGCAAAACTTGAATCATTTAGAATACTTGGATACTCCTTTGTCACCTTCCTCTGTCTCTCAAATGAATGCAACATCCCCGAAGATTGTTAAGTATTTTTAAAACTTACCATCAAACACGGTTTTGTGCTCCTGTGACGAGCACTTGGGGAGGCTCCACGCTCCTAAACTCTTGTCTCCTTTACGGGAACCGATATATGCAGCCACACTGAAGCAGTAACTCTGATCCTCATCTAGATTACTGAACTCTGCTCTGTTCTCTTTCACAGTTTTCAGATGCTGTATACAAACAAAGCAACATGAGAATTGCAAAGTCAGAGGGCATTTAAATAAGAAACGCACAACATGAAATCTTTAATAGTATCTTTGGCTGGTAAACGTGCTGACACTCACTTTTCCTGTGCTTCCAGCCTTGTTGTACACAATCTTGTACTGGAGTTCTTTTTTAAAGATGTCTCGGATGTTCAGTGATCTGCCATCTTTGTGCAGAGCTGTGATGGGGTCCTTTATGATCAACACAATCTTTTTGTCCTTACTCGTCAACTTGAACTCAGGTATTCCAATTAAAGCTACAGGCACAGATCAAAACTATTAGAAAAACTGCTTTAAATCAATATTTGTTGAATTTTGATGAATGAAGTAAGATTTTTATACATGGTTGGAGACTCACTGTCTTCATAAGGGCAGAACTGCTTAGATCTGGTGTATGGAGGCTCCACATGGTCAGAAATCATCCCGCGCAGGGACTCTGAGAGCACTTCAGCAGTATAAACCCCCTTTACGTCCAATTCATTGGTCAGGTCGCACTCTGTCTCAGTACTTCTGATGCAGTGAGGGTTTCTCTGTTTGTCCCTACCAGCTCTAAAGAGAAAGAAACATGTTGGTTAGATCACATGTATATAGGGGTTTCAATCATGTTTACACATTTATATTATTTTTGTATTGAATGTTGATGACAAAATAATGTTATGCTGTTAAGTAAGATATTTGTGTACTTGCCTTGAGAATTCAACTGTGTATGTGTAATTGACAGGTTTAGGTCCCCATGATAGGATAGTTTTGAAATTGTATGATGACCACAACACATTTTTTGCTTTGGTAAGCTCGCCCACTTGCACTGATGCTGGGATCCGTTTACGAGAGTAAGCCAGGCAAGAAAAAGTGCCGAAAATACAATCTTGCTCTCCATCGTTTATGATAGTAAACAGTCCAATTTGGCCGTGAAATATTTTATCCAACTTATCCCTCTGAAGAGTGTTTCTTAATCAAGTCTTCCACCAATAGCCCGTTTTTATAGTATGTGAGAGCTCTGGCGCTGC
>TU31404
CATTTTTAAAAAAAATAGTTTATGCTCATTAAATAATTTCAGTCTAGATATAAAACTCTATACACACACAGCAGCTATTACAATGTATTTCTAAAGAAAATAATAAATACGGCTGTTTAATAAACAAATACACTGTTCTATTTATCCATAAAAAATAAAAGCAATGGTCCGATACGTATAACATATCGTGTAGTGTTAGTGTTTCATAGAAACCAGTCCAGTGCTGCACTGCAGGTGTGCTTCGCACACACCGGTCCCTCTCAGCGCAAAAACGGTTACAGTCCAGCTGTACACCCCGTTCTCAGCTCGATCAGCAGAAATTGATTCTTGAGTCTAGACTATGGTTTCCTTGGCCATTGTTTTTTCTCTTCTTGCTCTCTTACAGCACACCACAATCAGAACGATTACAGCAATTACAAAAGCCAGTATAATAAGCGCTGCTCCTCCAATCACAGTCGGTCCATACACTACGGAAAAGAAGAGAGGAATTTTATTCATCGGATTATTACAACGGAGTCTATAATATGTTTTAATGAATTATAGTGTGATTTCAAAACAGCATTTGATAAAGTAGTATAGGAAAGAGCAGTGCACATGCATTATATGGAATGTAATAGAAAAGGATCTGACAGAATTTAAGTTACTGCACAGTTGTTGCTCAAATCCAGCTCATTTAATGGTTGTGGCTAGTTTGTATAAAGGTCAATGATAAATAAGTGTCCACATAATAGAAAAAACCCTTTTAAAAATCTATTTTTAAAAATAAACCAAGTTCATAGAAATCAACTATTTGTATTCTTTGTGGTTTCACTGGTTCGGAAATAAAACATACCATTTTAAACAAAACTTTCAATTTAATGACTTTATAAAATGTTTTTAAAACGATAGATCGATAGTGATATATTTTGAGTTTGAAAACTCCAGGTGCAGAAACAGAGGTTCCCACACAACTGAATGGAGTCAATTGAGCGCAGCTGTCATTGCCTGGTCAGTTTCTGAGTAATGTCAGAGTGTGTCATCCTCCCCTCCTCTACTCGGTTAGCTAACCCTGATCTGGCCTCTTCATGCTTAACAACCTTCCTGTTTTCCATAACACTGGAATTCTAGACAAATAAACCTTTGAGCAAAACTTGAATCATTTAGAATACTTGGATACTCCTTTGTCACCTTCCTCTGTCTCTCAAATGAATGCAACATCCCCGAAGATTGTTAAGTATTTTTAAAACTTACCATCAAACACGGTTTTGTGCTCCTGTGACGAGCACTTGGGGAGGCTCCACGCTCCTAAACTCTTGTCTCCTTTACGGGAACCGATATATGCAGCCACACTGAAGCAGTAACTCTGATCCTCATCTAGATTACTGAACTCTGCTCTGTTCTCTTTCACAGTTTTCAGATGTTCCTGTGCTTCCAGCCTTGTTGTACACAATCTTGTACTGGAGTTCTTTTTTAAAGATGTCTCGGATGTTCAGTGATCTGCCATCTTTGTGCAGAGCTGTGATGGGGTCCTTTATGATCAACACAATCTTTTTGTCCTTACTCGTCAACTTGAACTCAGGTATTCCAATTAAAGCTACAGGCACAGATCAAAACTATTAGAAAAACTGCTTTAAATCAATATTTGTTGAATTTTGATGAATGAAGTAAGATTTTTATACATGGTTGGAGACTCACTGTCTTCATAAGGGCAGAACTGCTTAGATCTGGTGTATGGAGGCTCCACATGGTCAGAAATCATCCCGCGCAGGGACTCTGAGAGCACTTCAGCAGTATAAACCCCCTTTACGTCCAATTCATTGGTCAGGTCGCACTCTGTCTCAGTACTTCTGATGCAGTGAGGGTTTCTCTGTTTGTCCCTACCAGCTCTAAAGAGAAAGAAACATGTTGGTTAGATCACATGTATATAGGGGTTTCAATCATGTTTACACATTTATATTATTTTTGTATTGAATGTTGATGACAAAATAATGTTATGCTGTTAAGTAAGATATTTGTGTACTTGCCTTGAGAATTCAACTGTGTATGTGTAATTGACAGGTTTAGGTCCCCATGATAGGATAGTTTTGAAATTGTATGATGACCACAACACATTTTTTGCTTTGGTAAGCTCGCCCACTTGCACTGATGCTAAATGAAAAAGACGACATCATAGCTTTCTCTGGTTTCATTACAACCCAACCTTGAGAGATACAACAAGACTACATATCTGAAGTTCATAGGTATAGGCTACTATACTGTACTGTGCCATGCTGTACTGTACTGTACAATACTATACTACAGACTGCCATACTATAAGTAATCAGTTTATATTTGTATTCGTTCACAGTTCTTAAAATAAACATCCCTAAAACACAGATTTCTTACCTGGGGATCCGTTTACGAGAGTAAGCCAGGCAAGAAAAAGTGCCGAAAATACAATCTTGCTCTCCATCGTTTATGATAGTAAACAGTCCAATTTGGCCGTGAAATATTTTATCCAACTTATCCCTCTGAAGAGTGTTTCTTAATCAAGTCTTCCACCAATAGCCCGTTTTTATAGTATGTGAGAGCTCTGGCGCTGC

Function

NR:

description
protein transport protein Sec61 subunit alpha-like 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU31403 False 2439 lncRNA 0.36 2 5355151 5357856
TU31404 True 2561 lncRNA 0.38 3 5355151 5357856

Neighbor

gene id symbol gene type direction distance location
CI01000004_05343381_05353920 NA coding upstream 920 5343381 ~ 5354231 (+)
CI01000004_05238552_05246750 TECRL2B coding upstream 108037 5237204 ~ 5247114 (+)
CI01000004_05227614_05231253 OLFM3, OLFM3A, OLFM3B coding upstream 123099 5227614 ~ 5232052 (+)
CI01000004_05154049_05203177 COL11A1B, COL11A1 coding upstream 151974 5154049 ~ 5203177 (+)
CI01000004_04924543_04956339 VAV3B coding upstream 398716 4924508 ~ 4956435 (+)
CI01000004_05389431_05393230 TMEM56 coding downstream 31514 5389370 ~ 5394211 (+)
CI01000004_05397192_05402109 HCCSA.1, RWDD3 coding downstream 39239 5397095 ~ 5402109 (+)
CI01000004_05454350_05455993 NA coding downstream 95985 5453841 ~ 5455993 (+)
CI01000004_05459139_05467673 PTBP2B, PTBP2 coding downstream 101283 5459139 ~ 5468857 (+)
CI01000004_05474127_05476501 NA coding downstream 115223 5473079 ~ 5476755 (+)
G27794 NA non-coding upstream 78799 5276112 ~ 5276352 (+)
G27791 NA non-coding upstream 89835 5264824 ~ 5265316 (+)
G27782 NA non-coding upstream 101106 5253669 ~ 5254045 (+)
G27780 NA non-coding upstream 106086 5248834 ~ 5249065 (+)
G27757 NA non-coding upstream 135141 5219615 ~ 5220010 (+)
G27836 NA non-coding downstream 11841 5369697 ~ 5369945 (+)
G27921 NA non-coding downstream 83508 5441364 ~ 5441713 (+)
G27943 NA non-coding downstream 121284 5479140 ~ 5479363 (+)
G27944 NA non-coding downstream 121679 5479535 ~ 5479749 (+)
G27924 NA non-coding downstream 123949 5481805 ~ 5581710 (+)
CI01000004_03550525_03552621 PTGER4C other upstream 1802705 3550329 ~ 3553423 (+)
G26245 NA other upstream 1832758 3509017 ~ 3522393 (+)
CI01000004_02745885_02768971 NA other upstream 2596213 2745885 ~ 2769135 (+)
G25992 NA other upstream 2618383 2736536 ~ 2736768 (+)
G25882 NA other upstream 2782102 2548075 ~ 2573049 (+)
G27805 NA other downstream 14969 5372825 ~ 5373803 (+)
G28165 NA other downstream 374733 5732589 ~ 5733001 (+)
G28302 NA other downstream 1112172 6470028 ~ 6502087 (+)
CI01000004_06571261_06572539 SEP15 other downstream 1213364 6570771 ~ 6572667 (+)
CI01000004_07654234_07655677 MRPL34 other downstream 2296916 7654234 ~ 7656383 (+)

Expression


Co-expression Network