G27836


Basic Information

Item Value
gene id G27836
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 5369697 ~ 5369945 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU31457
AGTATGCTAGCATATACAGTATGGGTCAAAGGTTTTTTTAAAAAAAGACAATACTTTTATTCTGCAAGGATGCATTAAACTGATCAAAAGTGACAGTAAAGACATTTATAATGTCACAAAGGATTTCTATTTTAAAAAGCTGTATTTTTAACTTTTTGTTCATCAAAGAATCCTGAAAAAAATGTATCAGAATTTCCACAGAAATATTAAGCAGCACAAATGTTTTCAAAAGAATAAATTACATTTTAA

Function

NR:

description
PREDICTED: histone-lysine N-methyltransferase 2E-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU31457 True 249 lncRNA 0.47 1 5369697 5369945

Neighbor

gene id symbol gene type direction distance location
CI01000004_05343381_05353920 NA coding upstream 15466 5343381 ~ 5354231 (+)
CI01000004_05238552_05246750 TECRL2B coding upstream 122583 5237204 ~ 5247114 (+)
CI01000004_05227614_05231253 OLFM3, OLFM3A, OLFM3B coding upstream 137645 5227614 ~ 5232052 (+)
CI01000004_05154049_05203177 COL11A1B, COL11A1 coding upstream 166520 5154049 ~ 5203177 (+)
CI01000004_04924543_04956339 VAV3B coding upstream 413262 4924508 ~ 4956435 (+)
CI01000004_05389431_05393230 TMEM56 coding downstream 19425 5389370 ~ 5394211 (+)
CI01000004_05397192_05402109 HCCSA.1, RWDD3 coding downstream 27150 5397095 ~ 5402109 (+)
CI01000004_05454350_05455993 NA coding downstream 83896 5453841 ~ 5455993 (+)
CI01000004_05459139_05467673 PTBP2B, PTBP2 coding downstream 89194 5459139 ~ 5468857 (+)
CI01000004_05474127_05476501 NA coding downstream 103134 5473079 ~ 5476755 (+)
G27801 NA non-coding upstream 11841 5355151 ~ 5357856 (+)
G27794 NA non-coding upstream 93345 5276112 ~ 5276352 (+)
G27791 NA non-coding upstream 104381 5264824 ~ 5265316 (+)
G27782 NA non-coding upstream 115652 5253669 ~ 5254045 (+)
G27780 NA non-coding upstream 120632 5248834 ~ 5249065 (+)
G27921 NA non-coding downstream 71419 5441364 ~ 5441713 (+)
G27943 NA non-coding downstream 109195 5479140 ~ 5479363 (+)
G27944 NA non-coding downstream 109590 5479535 ~ 5479749 (+)
G27924 NA non-coding downstream 111860 5481805 ~ 5581710 (+)
G28018 NA non-coding downstream 269786 5639731 ~ 5639932 (+)
CI01000004_03550525_03552621 PTGER4C other upstream 1817251 3550329 ~ 3553423 (+)
G26245 NA other upstream 1847304 3509017 ~ 3522393 (+)
CI01000004_02745885_02768971 NA other upstream 2610759 2745885 ~ 2769135 (+)
G25992 NA other upstream 2632929 2736536 ~ 2736768 (+)
G25882 NA other upstream 2796648 2548075 ~ 2573049 (+)
G27805 NA other downstream 2880 5372825 ~ 5373803 (+)
G28165 NA other downstream 362644 5732589 ~ 5733001 (+)
G28302 NA other downstream 1100083 6470028 ~ 6502087 (+)
CI01000004_06571261_06572539 SEP15 other downstream 1201275 6570771 ~ 6572667 (+)
CI01000004_07654234_07655677 MRPL34 other downstream 2284827 7654234 ~ 7656383 (+)

Expression


Co-expression Network