G27805


Basic Information

Item Value
gene id G27805
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 5372825 ~ 5373803 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU31414
ATACAAGATTGGGAAGTGGGGGAAGCGTAAAAGAACATATGGTTTGGTCTAAACATATACAAGGGCCTATGGCACAATTTAGCAATGTGTTGTTTGGTCAAATGAATTAAAGTCAAGAAGTAAAAAAAAAAAAAAAAAAAAAAACTCTTAAAAAGCCACAATGCTTAAATTGGCCTGGAAACCATTTCATCTTTCTGGATGTCTTTTTTTGCACTGCTGTCAGTCTGAAAACTTGATGAAATCTGCATCCAATAAATGCTAGAAATGACAATGCTAAACCAAATGATGCTCAAAATGAGTTTAAATCTAGGGATACAGATTGTGGTTAATGTGTCATGAATGACATTTGACGAATACTTTCATTTCTCCTCTAACCCATCTCAACTTTTAAAAGGACCAAACTTTAAAACTATAGTCTATTGTCTACCTACCTAATAAAATACTGTTTAATCAATAGAGGAATGATGATATAAAAACACTCCTCTTAACATCTGTTTCTTGTCATATAAAAAAGGCCAGCGAGGGAAAAAAAACCTCGCTCTGTTGATGAAAGGATTCCAAAAATAATCATCTGTGCTGTACGCCTGCAGTTTAATAGTCAATCCCATGGTCATAGTGGGCTCTGTATTCATTGTGGTAGTCTGCCTGGTACTCATCCGGATATTCCCCTTGGTATTCAGCCTGGTAGTCGCTGTCGCTGATCTCGGAGCCATTGGTGCCGGTGCCCTGGCTGCCATTGCTGTGGATGGTGGGCTCAGTGGGGGAGGCGCAGTATTTGGGATCGTACACCTGCCTGCCCAGCCCGTACACGCTCATGCCCTTCTGAGAGGCCACCTTGTTGGTGCCCATTTGCAGCGAGATTGTGGAGTTGTCCAGAGGCTGGACAGCCACTTTCTGGTCGAAAATATCCCTCCTGGTGCCGGGGGCCGAC
>TU31416
ATACAAGATTGGGAAGTGGGGGAAGCGTAAAAGAACATATGGTTTGGTCTAAACATATACAAGGGCCTATGGCACAATTTAGCAATGTGTTGTTTGGTCAAATGAATTAAAGTCAAGAAGTAAAAAAAAAAAAAAAAAAAAAACTCTTAAAAAGCCACAATGCTTAAATTGGCCTGGAAACCATTTCATCTTTCTGGATGTCTTTTTTTGCACTGCTGTCAGTCTGAAAACTTGATGAAATCTGCATCCAATAAATGCTAGAAATGACAATGCTAAACCAAATGATGCTCAAAATGAGTTTAAATCTAGGGATACAGATTGTGGTTAATGTGTCATGAATGACATTTGACGAATACTTTCATTTCTCCTCTAACCCATCTCAACTTTTAAAAGGACCAAACTTTAAAACTATAGTCTATTGTCTACCTACCTAATAAAATACTGTTTAATCAATAGAGGAATGATGATATAAAAACACTCCTCTTAACATCTGTTTCTTGTCATATAAAAAAGGCCAGCGAGGGAAAAAAAACCTCGCTCTGTTGATGAAAGGATTCCAAAAATAATCATCTGTGCTGTACGCCTGCAGTTTAATAGTCAATCCCATGGTCATAGTGGGCTCTGTATTCATTGTGGTAGTCTGCCTGGTACTCATCCGGATATTCCCCTTGGTATTCAGCCTGGTAGTCGCTGTCGCTGATCTCGGAGCCATTGGTGCCGGTGCCCTGGCTGCCATTGCTGTGGATGGTGGGCTCAGTGGGGGAGGCGCAGTATTTGGGATCGTACACCTGCCTGCCCAGCCCGTACACGCTCATGCCCTTCTGAGAGGCCACCTTGTTGGTGCCCATTTGCAGCGAGATTGTGGAGTTGTCCAGAGGCTGGACAGCCACTTTCTGGTCGAAAATATCCCTCCTGGTGCCGGGGGCCGAC
>TU31417
ATACAAGATTGGGAAGTGGGGGAAGCGTAAAAGAACATATGGTTTGGTCTAAACATATACAAGGGCCTATGGCACAATTTAGCAATGTGTTGTTTGGTCAAATGAATTAAAGTCAAGAAGTAAAAAAAAAAAAAAAAAAAAAAAACTCTTAAAAAGCCACAATGCTTAAATTGGCCTGGAAACCATTTCATCTTTCTGGATGTCTTTTTTTGCACTGCTGTCAGTCTGAAAACTTGATGAAATCTGCATCCAATAAATGCTAGAAATGACAATGCTAAACCAAATGATGCTCAAAATGAGTTTAAATCTAGGGATACAGATTGTGGTTAATGTGTCATGAATGACATTTGACGAATACTTTCATTTCTCCTCTAACCCATCTCAACTTTTAAAAGGACCAAACTTTAAAACTATAGTCTATTGTCTACCTACCTAATAAAATACTGTTTAATCAATAGAGGAATGATGATATAAAAACACTCCTCTTAACATCTGTTTCTTGTCATATAAAAAAGGCCAGCGAGGGAAAAAAAACCTCGCTCTGTTGATGAAAGGATTCCAAAAATAATCATCTGTGCTGTACGCCTGCAGTTTAATAGTCAATCCCATGGTCATAGTGGGCTCTGTATTCATTGTGGTAGTCTGCCTGGTACTCATCCGGATATTCCCCTTGGTATTCAGCCTGGTAGTCGCTGTCGCTGATCTCGGAGCCATTGGTGCCGGTGCCCTGGCTGCCATTGCTGTGGATGGTGGGCTCAGTGGGGGAGGCGCAGTATTTGGGATCGTACACCTGCCTGCCCAGCCCGTACACGCTCATGCCCTTCTGAGAGGCCACCTTGTTGGTGCCCATTTGCAGCGAGATTGTGGAGTTGTCCAGAGGCTGGACAGCCACTTTCTGGTCGAAAATATCCCTCCTGGTGCCGGGGGCCGAC
>TU31418
ATACAAGATTGGGAAGTGGGGGAAGCGTAAAAGAACATATGGTTTGGTCTAAACATATACAAGGGCCTATGGCACAATTTAGCAATGTGTTGTTTGGTCAAATGAATTAAAGTCAAGAAGTAAAAAAAAAAAAAAAAAAAACTCTTAAAAAGCCACAATGCTTAAATTGGCCTGGAAACCATTTCATCTTTCTGGATGTCTTTTTTTGCACTGCTGTCAGTCTGAAAACTTGATGAAATCTGCATCCAATAAATGCTAGAAATGACAATGCTAAACCAAATGATGCTCAAAATGAGTTTAAATCTAGGGATACAGATTGTGGTTAATGTGTCATGAATGACATTTGACGAATACTTTCATTTCTCCTCTAACCCATCTCAACTTTTAAAAGGACCAAACTTTAAAACTATAGTCTATTGTCTACCTACCTAATAAAATACTGTTTAATCAATAGAGGAATGATGATATAAAAACACTCCTCTTAACATCTGTTTCTTGTCATATAAAAAAGGCCAGCGAGGGAAAAAAAACCTCGCTCTGTTGATGAAAGGATTCCAAAAATAATCATCTGTGCTGTACGCCTGCAGTTTAATAGTCAATCCCATGGTCATAGTGGGCTCTGTATTCATTGTGGTAGTCTGCCTGGTACTCATCCGGATATTCCCCTTGGTATTCAGCCTGGTAGTCGCTGTCGCTGATCTCGGAGCCATTGGTGCCGGTGCCCTGGCTGCCATTGCTGTGGATGGTGGGCTCAGTGGGGGAGGCGCAGTATTTGGGATCGTACACCTGCCTGCCCAGCCCGTACACGCTCATGCCCTTCTGAGAGGCCACCTTGTTGGTGCCCATTTGCAGCGAGATTGTGGAGTTGTCCAGAGGCTGGACAGCCACTTTCTGGTCGAAAATATCCCTCCTGGTGCCGGGGGCCGAC

Function

NR:

description
PREDICTED: liprin-alpha-2-like

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU31414 False 931 TUCP 0.42 2 5372825 5373803
TU31416 False 930 TUCP 0.40 2 5372825 5373803
TU31417 False 932 TUCP 0.42 2 5372825 5373803
TU31418 True 928 TUCP 0.44 2 5372825 5373803

Neighbor

gene id symbol gene type direction distance location
CI01000004_05343381_05353920 NA coding upstream 18594 5343381 ~ 5354231 (+)
CI01000004_05238552_05246750 TECRL2B coding upstream 125711 5237204 ~ 5247114 (+)
CI01000004_05227614_05231253 OLFM3, OLFM3A, OLFM3B coding upstream 140773 5227614 ~ 5232052 (+)
CI01000004_05154049_05203177 COL11A1B, COL11A1 coding upstream 169648 5154049 ~ 5203177 (+)
CI01000004_04924543_04956339 VAV3B coding upstream 416390 4924508 ~ 4956435 (+)
CI01000004_05389431_05393230 TMEM56 coding downstream 15567 5389370 ~ 5394211 (+)
CI01000004_05397192_05402109 HCCSA.1, RWDD3 coding downstream 23292 5397095 ~ 5402109 (+)
CI01000004_05454350_05455993 NA coding downstream 80038 5453841 ~ 5455993 (+)
CI01000004_05459139_05467673 PTBP2B, PTBP2 coding downstream 85336 5459139 ~ 5468857 (+)
CI01000004_05474127_05476501 NA coding downstream 99276 5473079 ~ 5476755 (+)
G27836 NA non-coding upstream 2880 5369697 ~ 5369945 (+)
G27801 NA non-coding upstream 14969 5355151 ~ 5357856 (+)
G27794 NA non-coding upstream 96473 5276112 ~ 5276352 (+)
G27791 NA non-coding upstream 107509 5264824 ~ 5265316 (+)
G27782 NA non-coding upstream 118780 5253669 ~ 5254045 (+)
G27921 NA non-coding downstream 67561 5441364 ~ 5441713 (+)
G27943 NA non-coding downstream 105337 5479140 ~ 5479363 (+)
G27944 NA non-coding downstream 105732 5479535 ~ 5479749 (+)
G27924 NA non-coding downstream 108002 5481805 ~ 5581710 (+)
G28018 NA non-coding downstream 265928 5639731 ~ 5639932 (+)
CI01000004_03550525_03552621 PTGER4C other upstream 1820379 3550329 ~ 3553423 (+)
G26245 NA other upstream 1850432 3509017 ~ 3522393 (+)
CI01000004_02745885_02768971 NA other upstream 2613887 2745885 ~ 2769135 (+)
G25992 NA other upstream 2636057 2736536 ~ 2736768 (+)
G25882 NA other upstream 2799776 2548075 ~ 2573049 (+)
G28165 NA other downstream 358786 5732589 ~ 5733001 (+)
G28302 NA other downstream 1096225 6470028 ~ 6502087 (+)
CI01000004_06571261_06572539 SEP15 other downstream 1197417 6570771 ~ 6572667 (+)
CI01000004_07654234_07655677 MRPL34 other downstream 2280969 7654234 ~ 7656383 (+)
CI01000004_08414451_08436256 NA other downstream 3059902 8414316 ~ 8439933 (+)

Expression


Co-expression Network