G27921


Basic Information

Item Value
gene id G27921
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 5441364 ~ 5441713 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU31557
CTGACGGAAGCTAGATATTTTACTTCATAACTTGTTAAATATGGATTTTTTTTTTTTTTTTTTTTTTACACAAATGCGTCGATTCACTTCAGAAGGCCTTTATTAACCCCCCGGAGCCGTGTGGAGTACATGTTTATGATGGATGGATGTGGATGGAAGTACTTTCTTCAGCTCACACCCGTGACCCCTGTTCACTGCTGTTATAAAGCTCGGTTGCGTCAGGATATTTATTAATATAACTCTGATTGTGTTCATCAGAAAGAAGAAAGTCATATACACCCAGGATGGCTTGAGGGTGAGTAAAGCTCAGGGTAATTTTCATTTGAAAATGAACTAATCCTTTAATCTCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU31557 True 350 lncRNA 0.38 1 5441364 5441713

Neighbor

gene id symbol gene type direction distance location
CI01000004_05397192_05402109 HCCSA.1, RWDD3 coding upstream 39255 5397095 ~ 5402109 (+)
CI01000004_05389431_05393230 TMEM56 coding upstream 47153 5389370 ~ 5394211 (+)
CI01000004_05343381_05353920 NA coding upstream 87133 5343381 ~ 5354231 (+)
CI01000004_05238552_05246750 TECRL2B coding upstream 194250 5237204 ~ 5247114 (+)
CI01000004_05227614_05231253 OLFM3, OLFM3A, OLFM3B coding upstream 209312 5227614 ~ 5232052 (+)
CI01000004_05454350_05455993 NA coding downstream 12128 5453841 ~ 5455993 (+)
CI01000004_05459139_05467673 PTBP2B, PTBP2 coding downstream 17426 5459139 ~ 5468857 (+)
CI01000004_05474127_05476501 NA coding downstream 31366 5473079 ~ 5476755 (+)
CI01000004_05735852_05752650 PLPPR4, PLPPR4A coding downstream 294085 5735798 ~ 5754011 (+)
CI01000004_05781905_05788633 PALMD coding downstream 339889 5781602 ~ 5790006 (+)
G27836 NA non-coding upstream 71419 5369697 ~ 5369945 (+)
G27801 NA non-coding upstream 83508 5355151 ~ 5357856 (+)
G27794 NA non-coding upstream 165012 5276112 ~ 5276352 (+)
G27791 NA non-coding upstream 176048 5264824 ~ 5265316 (+)
G27782 NA non-coding upstream 187319 5253669 ~ 5254045 (+)
G27943 NA non-coding downstream 37427 5479140 ~ 5479363 (+)
G27944 NA non-coding downstream 37822 5479535 ~ 5479749 (+)
G27924 NA non-coding downstream 40092 5481805 ~ 5581710 (+)
G28018 NA non-coding downstream 198018 5639731 ~ 5639932 (+)
G28020 NA non-coding downstream 200127 5641840 ~ 5642113 (+)
G27805 NA other upstream 67561 5372825 ~ 5373803 (+)
CI01000004_03550525_03552621 PTGER4C other upstream 1888918 3550329 ~ 3553423 (+)
G26245 NA other upstream 1918971 3509017 ~ 3522393 (+)
CI01000004_02745885_02768971 NA other upstream 2682426 2745885 ~ 2769135 (+)
G25992 NA other upstream 2704596 2736536 ~ 2736768 (+)
G28165 NA other downstream 290876 5732589 ~ 5733001 (+)
G28302 NA other downstream 1028315 6470028 ~ 6502087 (+)
CI01000004_06571261_06572539 SEP15 other downstream 1129507 6570771 ~ 6572667 (+)
CI01000004_07654234_07655677 MRPL34 other downstream 2213059 7654234 ~ 7656383 (+)
CI01000004_08414451_08436256 NA other downstream 2991992 8414316 ~ 8439933 (+)

Expression


Co-expression Network