G27944


Basic Information

Item Value
gene id G27944
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 5479535 ~ 5479749 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU31592
CTGAAATGTTCTCTAATTCAGGAATAATCAGATTGTGAGAAGTAGCTTTAATACAGTTTTTTTTTTAACATAAAATAAAACATAAAATGTTAAAAACAACTGTATTAAAAAGGAAAGAGTCACATATGAGTGTACTTATGGCAGAAAGAGACATTTTTCCGTGGAAAATATCCTTTTCTGACTTAAAGGGACAGTTCACCCAAAAATAAAAATTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU31592 True 215 lncRNA 0.28 1 5479535 5479749

Neighbor

gene id symbol gene type direction distance location
CI01000004_05474127_05476501 NA coding upstream 2780 5473079 ~ 5476755 (+)
CI01000004_05459139_05467673 PTBP2B, PTBP2 coding upstream 10678 5459139 ~ 5468857 (+)
CI01000004_05454350_05455993 NA coding upstream 23542 5453841 ~ 5455993 (+)
CI01000004_05397192_05402109 HCCSA.1, RWDD3 coding upstream 77426 5397095 ~ 5402109 (+)
CI01000004_05389431_05393230 TMEM56 coding upstream 85324 5389370 ~ 5394211 (+)
CI01000004_05735852_05752650 PLPPR4, PLPPR4A coding downstream 256049 5735798 ~ 5754011 (+)
CI01000004_05781905_05788633 PALMD coding downstream 301853 5781602 ~ 5790006 (+)
CI01000004_05800602_05802011 NA coding downstream 320853 5800602 ~ 5802087 (+)
CI01000004_05812640_05834517 AGL, AGLA coding downstream 332891 5812640 ~ 5834517 (+)
CI01000004_05837208_05841141 NA coding downstream 357459 5837208 ~ 5841141 (+)
G27943 NA non-coding upstream 172 5479140 ~ 5479363 (+)
G27921 NA non-coding upstream 37822 5441364 ~ 5441713 (+)
G27836 NA non-coding upstream 109590 5369697 ~ 5369945 (+)
G27801 NA non-coding upstream 121679 5355151 ~ 5357856 (+)
G27794 NA non-coding upstream 203183 5276112 ~ 5276352 (+)
G27924 NA non-coding downstream 2056 5481805 ~ 5581710 (+)
G28018 NA non-coding downstream 159982 5639731 ~ 5639932 (+)
G28020 NA non-coding downstream 162091 5641840 ~ 5642113 (+)
G28023 NA non-coding downstream 165428 5645177 ~ 5645415 (+)
G28136 NA non-coding downstream 237363 5717112 ~ 5722122 (+)
G27805 NA other upstream 105732 5372825 ~ 5373803 (+)
CI01000004_03550525_03552621 PTGER4C other upstream 1927089 3550329 ~ 3553423 (+)
G26245 NA other upstream 1957142 3509017 ~ 3522393 (+)
CI01000004_02745885_02768971 NA other upstream 2720597 2745885 ~ 2769135 (+)
G25992 NA other upstream 2742767 2736536 ~ 2736768 (+)
G28165 NA other downstream 252840 5732589 ~ 5733001 (+)
G28302 NA other downstream 990279 6470028 ~ 6502087 (+)
CI01000004_06571261_06572539 SEP15 other downstream 1091471 6570771 ~ 6572667 (+)
CI01000004_07654234_07655677 MRPL34 other downstream 2175023 7654234 ~ 7656383 (+)
CI01000004_08414451_08436256 NA other downstream 2953956 8414316 ~ 8439933 (+)

Expression


Co-expression Network