G28018


Basic Information

Item Value
gene id G28018
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 5639731 ~ 5639932 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU31672
GTGAATTTAATGTTTTTCAATATTTGTTTTTGTAATGTTGCTGTTTTCTAAATTTACTTAATTTTAAGTAAATATGTTTTAAAATCATAAGATGTGATTTTGTTTTATTCAGTGTTACTATCAGCAAACACTAACAGGTACATTATTAACAGTATTAACTGTCCATACATTGCACTTTAAAAAGAATCTGTTGAGGTTCTTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU31672 True 202 lncRNA 0.25 1 5639731 5639932

Neighbor

gene id symbol gene type direction distance location
CI01000004_05474127_05476501 NA coding upstream 162976 5473079 ~ 5476755 (+)
CI01000004_05459139_05467673 PTBP2B, PTBP2 coding upstream 170874 5459139 ~ 5468857 (+)
CI01000004_05454350_05455993 NA coding upstream 183738 5453841 ~ 5455993 (+)
CI01000004_05397192_05402109 HCCSA.1, RWDD3 coding upstream 237622 5397095 ~ 5402109 (+)
CI01000004_05389431_05393230 TMEM56 coding upstream 245520 5389370 ~ 5394211 (+)
CI01000004_05735852_05752650 PLPPR4, PLPPR4A coding downstream 95866 5735798 ~ 5754011 (+)
CI01000004_05781905_05788633 PALMD coding downstream 141670 5781602 ~ 5790006 (+)
CI01000004_05800602_05802011 NA coding downstream 160670 5800602 ~ 5802087 (+)
CI01000004_05812640_05834517 AGL, AGLA coding downstream 172708 5812640 ~ 5834517 (+)
CI01000004_05837208_05841141 NA coding downstream 197276 5837208 ~ 5841141 (+)
G27924 NA non-coding upstream 58021 5481805 ~ 5581710 (+)
G27944 NA non-coding upstream 159982 5479535 ~ 5479749 (+)
G27943 NA non-coding upstream 160368 5479140 ~ 5479363 (+)
G27921 NA non-coding upstream 198018 5441364 ~ 5441713 (+)
G27836 NA non-coding upstream 269786 5369697 ~ 5369945 (+)
G28020 NA non-coding downstream 1908 5641840 ~ 5642113 (+)
G28023 NA non-coding downstream 5245 5645177 ~ 5645415 (+)
G28136 NA non-coding downstream 77180 5717112 ~ 5722122 (+)
G28178 NA non-coding downstream 206544 5846476 ~ 5846828 (+)
G28148 NA non-coding downstream 241549 5881481 ~ 6018658 (+)
G27805 NA other upstream 265928 5372825 ~ 5373803 (+)
CI01000004_03550525_03552621 PTGER4C other upstream 2087285 3550329 ~ 3553423 (+)
G26245 NA other upstream 2117338 3509017 ~ 3522393 (+)
CI01000004_02745885_02768971 NA other upstream 2880793 2745885 ~ 2769135 (+)
G25992 NA other upstream 2902963 2736536 ~ 2736768 (+)
G28165 NA other downstream 92657 5732589 ~ 5733001 (+)
G28302 NA other downstream 830096 6470028 ~ 6502087 (+)
CI01000004_06571261_06572539 SEP15 other downstream 931288 6570771 ~ 6572667 (+)
CI01000004_07654234_07655677 MRPL34 other downstream 2014840 7654234 ~ 7656383 (+)
CI01000004_08414451_08436256 NA other downstream 2793773 8414316 ~ 8439933 (+)

Expression


Co-expression Network