G28020


Basic Information

Item Value
gene id G28020
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 5641840 ~ 5642113 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU31674
TGAGAGGAGGCAATGTCTCCATCGCGCTATGATTGGATGTAATTGGTTATGATTGGATATGATTGGTTTGTGCGATAAATCCCGCCTCTTGTTTACATGCACGTTCCGCGTGTCAGTTTGAATGAACAAATGATGGCGTCAATGGGAAGACTAATTGAAAAGTAAGTAAACAGATCACCCAGTTAGATATCACTGCTTTATGTCACGTCAAAATCAAACTTGAAATGGACTGAAAACACGATGACTGTGGGGGTTTTTAGTGCAATCAGCTTGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU31674 True 274 lncRNA 0.41 1 5641840 5642113

Neighbor

gene id symbol gene type direction distance location
CI01000004_05474127_05476501 NA coding upstream 165085 5473079 ~ 5476755 (+)
CI01000004_05459139_05467673 PTBP2B, PTBP2 coding upstream 172983 5459139 ~ 5468857 (+)
CI01000004_05454350_05455993 NA coding upstream 185847 5453841 ~ 5455993 (+)
CI01000004_05397192_05402109 HCCSA.1, RWDD3 coding upstream 239731 5397095 ~ 5402109 (+)
CI01000004_05389431_05393230 TMEM56 coding upstream 247629 5389370 ~ 5394211 (+)
CI01000004_05735852_05752650 PLPPR4, PLPPR4A coding downstream 93685 5735798 ~ 5754011 (+)
CI01000004_05781905_05788633 PALMD coding downstream 139489 5781602 ~ 5790006 (+)
CI01000004_05800602_05802011 NA coding downstream 158489 5800602 ~ 5802087 (+)
CI01000004_05812640_05834517 AGL, AGLA coding downstream 170527 5812640 ~ 5834517 (+)
CI01000004_05837208_05841141 NA coding downstream 195095 5837208 ~ 5841141 (+)
G28018 NA non-coding upstream 1908 5639731 ~ 5639932 (+)
G27924 NA non-coding upstream 60130 5481805 ~ 5581710 (+)
G27944 NA non-coding upstream 162091 5479535 ~ 5479749 (+)
G27943 NA non-coding upstream 162477 5479140 ~ 5479363 (+)
G27921 NA non-coding upstream 200127 5441364 ~ 5441713 (+)
G28023 NA non-coding downstream 3064 5645177 ~ 5645415 (+)
G28136 NA non-coding downstream 74999 5717112 ~ 5722122 (+)
G28178 NA non-coding downstream 204363 5846476 ~ 5846828 (+)
G28148 NA non-coding downstream 239368 5881481 ~ 6018658 (+)
G28159 NA non-coding downstream 303585 5945698 ~ 5947048 (+)
G27805 NA other upstream 268037 5372825 ~ 5373803 (+)
CI01000004_03550525_03552621 PTGER4C other upstream 2089394 3550329 ~ 3553423 (+)
G26245 NA other upstream 2119447 3509017 ~ 3522393 (+)
CI01000004_02745885_02768971 NA other upstream 2882902 2745885 ~ 2769135 (+)
G25992 NA other upstream 2905072 2736536 ~ 2736768 (+)
G28165 NA other downstream 90476 5732589 ~ 5733001 (+)
G28302 NA other downstream 827915 6470028 ~ 6502087 (+)
CI01000004_06571261_06572539 SEP15 other downstream 929107 6570771 ~ 6572667 (+)
CI01000004_07654234_07655677 MRPL34 other downstream 2012659 7654234 ~ 7656383 (+)
CI01000004_08414451_08436256 NA other downstream 2791592 8414316 ~ 8439933 (+)

Expression


Co-expression Network