G28848


Basic Information

Item Value
gene id G28848
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 8470745 ~ 8471884 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU32623
AATATTCTGCACAAGCACGGTAGCTCGATATAATACACATCCAGTCGTCTAATATTGCTTGAATGTCCAAACTGGCAAACCTTAAAACACATACAACTGACAAGTTTAGTGAAGACTCAAGGCTCACCGTTCACGCGCCATCTCTGTGTGTGTTGACTCGGCGACGCGTTCATCTCCGTGTTGCTTTCATGCCACTGACTGGATGAGGCGGAGTCACATGGCTACACACGCGGTAGTATGCTTTTAAGGGGGAAGTATTAACAGGATTAAAAAACCGAAATAACCGACATGGGAAAATTACGTTAGTTTGAGGTTCTGAATTTCGGTTTTGATTACTTTTCGATTAATCATCCAGCCCTATTTCATTCTATTTTCTGTTTCATGCTAGGTACTCTATTGTATGTTAGATAAAATGTAAGCGATGTGGACAAATCATTCAACAGGTTGCCATAGAATGCATCAGACTGTTTGTAGTACTAACAACAGTTTGAGAGAAACTGTCAGGCAGCCAAACTTCCATAGAAGAGAAACTACAGGTTTCCACACTGGTTTGTCGTTTGTGCACTTGTGGTTACATTTTTCTCTGGAGGTAAACAATAAAGAAGGGAATCTGGAATGAGTCACTGTGGTTCTGAAGGGAATTATGACTACTTTAGTCATATATCATATCTCAGCCTTTGCTTGGATGAATTAGATACTGTTAATAGCTGATATTCCCACACCTGTGAACAGGGTCAGGAATTAACCAGTGCACTGGGCAAAGATGTCTTCGAAAATTACATTTTTAAAAATATATTTCATAGCATTCTATTAGAAATATCTAGCCTCCTCCAACACTATAGCTATCTGATTTGTTCTGTATTCACTCAAAGGCGAGTGTGAAATGTAGAGATAATATCAAGTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU32623 True 904 lncRNA 0.39 2 8470745 8471884

Neighbor

gene id symbol gene type direction distance location
CI01000004_08414451_08436256 NA coding upstream 34482 8414316 ~ 8439933 (+)
CI01000004_08382042_08402126 PLD1A coding upstream 68231 8380472 ~ 8402514 (+)
CI01000004_08302613_08354790 FNDC3BA coding upstream 115950 8302613 ~ 8354795 (+)
CI01000004_08252556_08257067 NA coding upstream 212652 8252394 ~ 8258093 (+)
CI01000004_08243282_08245264 NA coding upstream 225376 8242979 ~ 8245369 (+)
CI01000004_08507941_08515797 SLC2A2 coding downstream 36057 8507941 ~ 8516308 (+)
CI01000004_08518587_08521540 EIF5A2, EIF5A.L, EIF5A coding downstream 46578 8518462 ~ 8521661 (+)
CI01000004_08573940_08586930 NA coding downstream 100857 8572741 ~ 8587170 (+)
CI01000004_08618566_08669147 NA coding downstream 146682 8618566 ~ 8669147 (+)
CI01000004_08693419_08703448 PLPPR3A coding downstream 221535 8693419 ~ 8704156 (+)
G28843 NA non-coding upstream 59525 8410726 ~ 8411220 (+)
G28835 NA non-coding upstream 101672 8368861 ~ 8369073 (+)
G28834 NA non-coding upstream 104824 8365695 ~ 8365921 (+)
G28819 NA non-coding upstream 186648 8277202 ~ 8284097 (+)
G28801 NA non-coding upstream 437033 8028250 ~ 8033712 (+)
G28849 NA non-coding downstream 55561 8527445 ~ 8527675 (+)
G28855 NA non-coding downstream 82348 8554232 ~ 8554563 (+)
G28858 NA non-coding downstream 123968 8595852 ~ 8597783 (+)
G28861 NA non-coding downstream 130739 8602623 ~ 8602843 (+)
G28862 NA non-coding downstream 131211 8603095 ~ 8603461 (+)
CI01000004_07654234_07655677 MRPL34 other upstream 814362 7654234 ~ 7656383 (+)
CI01000004_06571261_06572539 SEP15 other upstream 1896324 6570771 ~ 6572667 (+)
G28302 NA other upstream 1968658 6470028 ~ 6502087 (+)
G28165 NA other upstream 2737744 5732589 ~ 5733001 (+)
G28859 NA other downstream 127351 8599235 ~ 8599603 (+)
CI01000004_08976512_08980033 TTPA other downstream 504554 8976254 ~ 8980984 (+)
G30797 NA other downstream 2025492 10497376 ~ 10497788 (+)
G31710 NA other downstream 3165367 11637251 ~ 11642400 (+)
CI01000004_11666900_11667179 NA other downstream 3192889 11666900 ~ 11667659 (+)

Expression


Co-expression Network