G63068 (dnajc5,dnajc5aa,LOC107678568,LOC107668106,LOC103036084,LOC108412505,LOC100691596)


Basic Information

Item Value
gene id G63068
gene name dnajc5,dnajc5aa,LOC107678568,LOC107668106,LOC103036084,LOC108412505,LOC100691596
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 11543989 ~ 11545449 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU93374
CCTTGGCCCACCAGCTGGATAGGACAAAGTAAGTGTTGACGTTCTCTTCTCCAAACTGTTCAGCCACATAAAGTCCCAGAGAGCCGTACTTATCATAGATGTTTCTCTTTGTCGGGTCATTAAGGATGGCATGGGCATTGTTTATCTCTTTGAACTTATCAGCTGCCTCAGGGTTGTCAGGATTCTTGTCAGGGTGATATTTCAATGCCAATTTCTGTATGACTTCTTGATGTCATCGACAGTGGCCACTTTGTCGACACCCAGCACATGATAGAGTGATTCTCCAGAGGTGGAGAGAGTGCGCTGCCTCTGCTGCTCAGCCATGGCAAATCAGGTCCTCAAcaatctgaacacacacaacaTGCTGCATGCTAATATTACAAAGCATGAACACTGaagcatttcatttgaataacatAATGCAATATTTCCAAATGAGGACACTGGCCTAATAACAAACTACCTTATCactataaatcaaaaataagcataaatCCTTATTATTTGCCAAGGGCATCGATTGATCTTTTCTTgcgctctctttcttttcatcaggCTTTCATTTTCAGTGACAAGaagttctttttaattattttaatttaccatTTCG

Function

symbol description
dnajc5aa Is expressed in nervous system and neural tube. Human ortholog(s) of this gene implicated in neuronal ceroid lipofuscinosis 4B. Orthologous to human DNAJC5 (DnaJ heat shock protein family (Hsp40) member C5).
dnajc5 Predicted to enable ATP-dependent protein binding activity. Predicted to be involved in synaptic vesicle exocytosis. Predicted to act upstream of or within negative regulation of neuron apoptotic process. Located in Golgi apparatus and plasma membrane. Implicated in neuronal ceroid lipofuscinosis 4B.

NR:

description
PREDICTED: eosinophil peroxidase-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU93374 True 610 lncRNA 0.41 2 11543989 11545449

Neighbor

gene id symbol gene type direction distance location
si:dkey-70p6.1 LOC107731205,LOC107668067,LOC107745762,LOC107549481,LOC107549992 coding downstream 39957 11481644 ~ 11504032 (-)
emilin3a LOC107668027,LOC107731182,LOC107549958,LOC107550125,LOC107695222,LOC107745820 coding downstream 92543 11445273 ~ 11451446 (-)
magixa magixa,LOC107731248,LOC107668068,LOC107549995,LOC107695301 coding downstream 151318 11351304 ~ 11392671 (-)
porcnl LOC107731263,LOC107549961,LOC107668005,LOC107695296,LOC107550497,LOC107745836 coding downstream 287481 11250881 ~ 11256508 (-)
csde1 csde1,LOC107731193,LOC107549382,LOC107695294,LOC107549999,LOC107745769,LOC107668033 coding downstream 293406 11235474 ~ 11250583 (-)
ptk6a ptk6,LOC107731218,LOC107668051 coding upstream 24099 11569548 ~ 11575213 (-)
nol4la nol4la,LOC107549982,LOC107731219,LOC107745834,LOC107680239,LOC107550513,LOC107668103,LOC108412512,LOC103039117 coding upstream 33713 11579162 ~ 11615271 (-)
gpr173 gpr173,LOC107731146,LOC107678674,LOC107549585,LOC107549979,LOC107745752 coding upstream 129825 11675274 ~ 11683625 (-)
wasb LOC107731288,LOC107668059,LOC107745750,LOC107549977,LOC107678704,LOC107549603 coding upstream 197690 11743139 ~ 11747881 (-)
slc38a5b slc38a5b,slc38a5,LOC107668060,LOC107549975,LOC107731265,LOC107745748,LOC107678718,LOC107549617 coding upstream 204147 11749596 ~ 11764650 (-)
G63074 NA non-coding downstream 4156 11539511 ~ 11539833 (-)
G63073 NA non-coding downstream 5690 11538012 ~ 11538299 (-)
G63072 NA non-coding downstream 7472 11536043 ~ 11536517 (-)
G63071 NA non-coding downstream 9217 11534549 ~ 11534772 (-)
G63065 NA non-coding downstream 20351 11523022 ~ 11523638 (-)
G63075 NA non-coding upstream 8601 11554050 ~ 11557279 (-)
G63076 NA non-coding upstream 15538 11560987 ~ 11561633 (-)
LOC122350252 NA non-coding upstream 74998 11620447 ~ 11621205 (-)
G63120 NA non-coding upstream 103060 11648509 ~ 11651904 (-)
G63127 NA non-coding upstream 117986 11663435 ~ 11664774 (-)
LOC122350269 LOC107549994,LOC107731173,LOC107745767,LOC107695299,LOC107668028,LOC560461,LOC107549455 other downstream 198001 11284354 ~ 11345988 (-)
smim1 smim1,LOC107668050 other downstream 374516 11131670 ~ 11169473 (-)
LOC122349915 nphp4,LOC107550077,LOC107695281 other downstream 412751 11096140 ~ 11131238 (-)
cep104 cep104,LOC107668088,LOC107745778 other downstream 553254 10973305 ~ 10990735 (-)
trnar-ccg_26 NA other downstream 1003698 10540219 ~ 10540291 (-)
G63095 NA other upstream 16829 11562278 ~ 11615925 (-)
G63274 nt5dc2,LOC107731170,LOC107549943,LOC107668043,LOC107550186,LOC107678756,LOC107745746 other upstream 232822 11778271 ~ 11779251 (-)
prok1 prok1,LOC107680267,LOC107711938,LOC107731240 other upstream 505908 12051357 ~ 12054530 (-)
G63385 NA other upstream 718245 12263694 ~ 12264533 (-)
kcnq2a LOC107679259,LOC107668096,LOC107731192,LOC107550457,LOC108442249,LOC108265949,LOC107711924 other upstream 796711 12342160 ~ 12363104 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000010_00924389_00928340 DNAJC5 coding CI01000010 null 923961 ~ 928351 (+)