alx3 (alx3,LOC107680275,LOC107711935,LOC107731154,LOC107591866,LOC107668019)


Basic Information

Item Value
gene id alx3
gene name alx3,LOC107680275,LOC107711935,LOC107731154,LOC107591866,LOC107668019
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 12085919 ~ 12091662 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043246535.1
CGGGGCGATGGAGGCTAAGAGCTGTCTGTCCTTCTCCTCGCCGTCAAACAGGATCACGCCCGAGAACTCACCGGGTTTGGAGCATAATTCCGGCGCGTTCTTTCAGTGCGACGACCTCCAAAAGTCTCCGCATCTTTCTCTGGCGCATCGACATGAGTTCTTTATGGGACGCTACGCCGACGGCGGCTCCGCGGACTTTACGCACGGCGTCAGCGCCACGACTCCCCGCGCCTCGCCCGGGAAGCATACAAAGTATTTGGAGAATATGAACCAGGACCAAAAACCTTCGATTACCGAGAAGAGCTCGTCGTTTTATGAGAGCAATTCTGATGGAGATAAGACCTTACCCAAGGCCCTTGGATATCCCACTTTAGACTCGGAGTGTTGTGGAAAACTGAAAGAGCCGTCCAACGGGTTGCCTGGAGACTCCATCGCTGACTCCATCGACCTGTCAGGCAAGAACAAGAAGCGGAGAAACAGGACAACTTTCAGCACCTTTCagctggaggagctggagaagGTCTTTCAGAAGACACATTACCCAGATGTGTATGCACGGGAACAGCTGGCACTGAGGACGGAGCTCACGGAGGCAAGAGTGCAGGTGTGGTTCCAAAACAGACGGGCCAAATGGAGGAAACGAGAGCGTTACGGAAAGATGCAAGAGGTGCGAAACCACTTTGCTGCTACATACGATATCTCCCTTCTCCCTCGCTCCGACTCATACCAGATGCAAAATAACCTATGGCCAAGCAGTGCGGGAACGGGAGGCGCCGGCGGAGCGGCTAGTGGTTGTGTTCTGGGAGCGGAAAACATGGCATCGTCTTGTATGACCCCTTACCCCCATCCTCACGGCAACCTACCCGGGCTCATGGGTATGTCTGCGTCTCCAGGCCAtcctcatcaccatcatcatcatcatcacccgCCCCACCACCCTAGCATTAACGGGATATACTCACTCCATGGCTTCCCAGGAAGCCTGGGGGCCCATTCCTTCGAGCCCGGACCAGAGTCTGAATACAAGCCCTCAGGCCTGGTGGCCCTGCGCATGAAAACCAAAGACCCCGGGAGCCTATTATCCTGGCCGACATGACCGTGCAGCTGCGACTGCGATTGCGATGACGTCACTGAGCCAACAAACATGTCTGCACATACTGGCATGTTAATGCTACTCGGAAACAGAGACACTTTTTTAACGCTCAATGTACACATCTAATTTTTGCAGGCTTCCTGATGTTTTCACTGCAAAGATATATTTGGTGCCcggatttttttgttgttgttgaaatgCTATGAGCCATAGTGGGCTTTGCACACAACTCGCCTTAATATAAAATTCTTCCTGGGATacttaaattgtaaaaaatgatGCAAAGTTTATTACCAACGATGATGTGCAACATGTTAATTTAAGATTGTTAATCTCATAGTTTCGGTGTATGCAGTGGTTTAGCCCCATTATGTATACATGTAGCCCCAGTcaataaatgattttacattttctgactTGTGTGCTTCTGGTAAACCA

Function

symbol description
alx3 Is expressed in cranial neural crest; head mesenchyme; neural crest; neurocranium; and periocular mesenchyme. Orthologous to human ALX3 (ALX homeobox 3).

NR:

description
homeobox protein aristaless-like 3 isoform X2

GO: NA

KEGG:

id description
K09323 ALX3; homeobox protein aristaless-like 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043246535.1 True 1531 mRNA 0.51 4 12085919 12091662

Neighbor

gene id symbol gene type direction distance location
rbm15 rbm15,LOC107731203,LOC107680058 coding downstream 2881 12078239 ~ 12083038 (-)
zgc:110353 zgc:110353,LOC107680259,LOC107711939,LOC107591867,LOC107668023,LOC107731165,LOC107550464,LOC107711928 coding downstream 72769 12010488 ~ 12013150 (-)
adora1b adora1b,LOC107550463,LOC107711940,LOC107668012,LOC107591868,LOC107731293,LOC107680252 coding downstream 102610 11977200 ~ 11983309 (-)
dclre1b LOC107731274,LOC107668110,LOC107550475,LOC107712006,LOC107678930 coding downstream 111090 11970741 ~ 11974829 (-)
lhfpl5b lhfpl5b,LOC107591869,LOC107745833,LOC107731128 coding downstream 194636 11883738 ~ 11891283 (-)
kcnc4 kcnc4,LOC107731196,LOC107668031,LOC107711934,LOC107679013,LOC107591816 coding upstream 58325 12149987 ~ 12168140 (-)
hspa1b si:ch211-199o1.2,LOC107668030,LOC108442126,LOC104926754 coding upstream 77225 12168887 ~ 12171370 (-)
ahcyl1 ahcyl1,LOC107731197,LOC107668032,LOC107591817,LOC107679038 coding upstream 80527 12172189 ~ 12189485 (-)
nfyal LOC107731273,LOC107711997,LOC107591820,LOC107668092,LOC108265435,LOC107679058 coding upstream 98345 12190007 ~ 12197235 (-)
sort1b sort1b,LOC107550487,LOC107668073,LOC107731125,LOC107591814,LOC107679020,LOC107711994 coding upstream 107949 12199611 ~ 12213569 (-)
G63350 NA non-coding downstream 63166 12022515 ~ 12022753 (-)
G63347 NA non-coding downstream 65966 12019711 ~ 12019953 (-)
G63344 NA non-coding downstream 68568 12016726 ~ 12017351 (-)
G63304 LOC107549947,LOC107731153,LOC107668018,LOC107591857,LOC107745734 non-coding downstream 229857 11855745 ~ 11856062 (-)
G63254 LOC106565120 non-coding downstream 262675 11821284 ~ 11823244 (-)
G63321 NA non-coding upstream 12916 12104578 ~ 12139398 (-)
G63316 slc6a17,LOC107668054,LOC107731213,LOC107712000,LOC107678997 non-coding upstream 39829 12131491 ~ 12134728 (-)
G63329 LOC107711999,LOC107550488,LOC107668094,LOC107731126 non-coding upstream 67527 12159189 ~ 12198367 (-)
G63395 LOC107591850 non-coding upstream 211066 12302728 ~ 12304329 (-)
G63404 NA non-coding upstream 240794 12332456 ~ 12334605 (-)
prok1 prok1,LOC107680267,LOC107711938,LOC107731240 other downstream 31389 12051357 ~ 12054530 (-)
G63274 nt5dc2,LOC107731170,LOC107549943,LOC107668043,LOC107550186,LOC107678756,LOC107745746 other downstream 306668 11778271 ~ 11779251 (-)
G63095 NA other downstream 469994 11562278 ~ 11615925 (-)
LOC122350269 LOC107549994,LOC107731173,LOC107745767,LOC107695299,LOC107668028,LOC560461,LOC107549455 other downstream 739931 11284354 ~ 11345988 (-)
smim1 smim1,LOC107668050 other downstream 916446 11131670 ~ 11169473 (-)
G63385 NA other upstream 172032 12263694 ~ 12264533 (-)
kcnq2a LOC107679259,LOC107668096,LOC107731192,LOC107550457,LOC108442249,LOC108265949,LOC107711924 other upstream 250498 12342160 ~ 12363104 (-)
foxp3a foxp3a,si:ch211-167b20.8,LOC107669635,LOC107731227,LOC107550508,LOC107711972,LOC107679368,LOC107591799,LOC107591800 other upstream 397535 12489197 ~ 12504153 (-)
zmynd12 zymnd12,LOC107591768,LOC107711949,LOC107679700 other upstream 893992 12985654 ~ 13083372 (-)
tafa3b si:ch211-254n4.3,fam19a3,LOC107711931,LOC107591764,LOC107562776,LOC107669582,LOC102289964,LOC104918365,LOC106582736,LOC105921069,LOC106517667,LOC108231490,LOC106937909 other upstream 1094205 13185867 ~ 13246130 (-)

Expression


Co-expression Network