G31874


Basic Information

Item Value
gene id G31874
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 12302619 ~ 12304869 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU36133
CTCACACTCTCACACACACTCTCCCTGACTAACAATAGATGATTGAGGTGTGTAAATGCTCACCTGTGCTGTGATTTTGGCAGTGGCGGCTGCAGCGGCTACGGCAGCAGCGGGAGGCAGTCCGCCCGGCGTTGCTGGAGTCAGAAGGGGCATGGGTGGCGTGACGGCTTTGCCCACTCGCAGGTACTGCCCGCCCAAGTCGAAAAGGTTCATGGAGGAAACGGCATCCTGCGCAGACTGGGCCTTATCATATTCTACAGAGGAAACAGGGAGGACTAAGACTCAACAGCATCCAAGAAGACTCAGCATAAATCTACCAGAGCTCTGAGACAGTTACTGTGTAATTACCAGCGGGTACTTATGGCACAAATTGTCCGTAACAGAGCCTAAGAAAACAACGACAACAGAAATAAAAACTTACTATGAAAGCATGTGAGGAACCTGCCCCCACCCTTCTCTATCCCCTGTGAGACATGTAGAGAACAGCATTCTGCCATGACTGACTGCTCTCAGTCAGATACATTTATATTCATCCGAATGGGTGAAGCAGTCGCCCGCTCACCTATGAAGCCATAGCCTTTGTGCTTTCCCGTCGTGGGGTCCCGCGCCAGGGTGCAAGACTTGATTCTTCCGAAGGCCTCGAACACGCTCTTGATGTCGTCGTCTGACAAATCGGGATGCACGGACGCCACGTAAATCCGGTTGAAGGCGCGCGCTTCTTCGGCTAGCTGGTCTATGATCGGTTGAGCCTGACCAATGTTGCTCGGCCGTCCCACTTTAATGTTTCTACCACCCAGCATAACGGAGTTCATCTGTTCTAAAGCGAGCTGTGCTGCCTCTGGTACTTCATACTCTACAAATGCAAAACCCTTGTGTTTTAATGTAACAGAGTCCCAGGACATGTCAATGCTCTTAATGGGACCGAAAGGAGCAAAGGCCTGTCTGATGGTGTCTTCTCCTAGCTCGTAGTAGATGGACCCAACATAAACACGGCACATTATGGCTAATGCCCGTTGCCTCTGTGCTGCAACCTGTAACGGACAACTGAAATGATCAGATGGTGCTAAGCCAGGCATATGCTCATCACTCATGGTGTTTATCTTTTATAGGCTTGTTCCAATGATTGAGGATAGAACCAGCAGACAATGAACACGCTGGCACCGAAGACATAGCACTGGCTTTTCTTTACCTCCACCCATTACACACATGAGTACTAAACAGCCACATGTATGCCAACAAAAGGAGGGGGAAACAAACATCTACTGCATTCACAAAAAGTACAGCAAGGTTACAGTGTTACTCTGAGAAACTGCGTTGGACTTACAGACTGTAGTGGTGAGAGGGGATCTCCAAAGCCCATCGTTAATGAGGCCATCTGAAGGGAATTAGGGAGCTGTCAGGAAAAACAAACAAGCTGTCAATGACTGTTGTACCCTTTTTGTACCATAGCGGGATGTTGTCAGATGAGTGCAGAAAGGGTCCTTGAGATAACACTCACATTATGATAAATAATTACAATCATTTTTGAATACAAAAAAACCTTGATTGCAATTTATCCATGTCAAGTAACCGGCAAAATACCTGAAGCGGCGCATTCCACAGACGGGCATCCATGAATCGCATTATTAGACCATTTTCTAAGGCTGCACGACCATTTAAAAACCATACTATAGCATCGTGCTAGTGTGAATTCACAAAGGCAGCGATTCTCTTTCGCAAGACACGAAAGAGAACTCACACACGTGTTGTGAGAAGATTTGTGCACTCATCAGAAGCGCGCACACGTGTGTACCGCGTGCAAATATTGAGTTCTCTTTCAAGTCTTGCGCTTGAATGGACAAATTCACACAAAAATTGTCAACATGCCCGTCTTGGCAATAATCCTAACAAACACTGTAGGTTATGTCTTATGCCAAGTTTACACTACAGGATTTTAAGCCCGATTTGCAAGTTAACGAGCTCACCGACAGGTCGGGCTGTGATCGGGGGAAAATCAGCGAGTGATCGGCGCTCGCCAATCTTTATGTGTGAACTACTCAACGACGCATC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU36133 True 2049 lncRNA 0.47 3 12302619 12304869

Neighbor

gene id symbol gene type direction distance location
CI01000004_12222833_12223126 NA coding upstream 79375 12221926 ~ 12223244 (+)
CI01000004_12033980_12034384 NA coding upstream 268217 12033656 ~ 12034402 (+)
CI01000004_11897082_11898506 MYCB coding upstream 403404 11896232 ~ 11899215 (+)
CI01000004_11863724_11890961 NA coding upstream 411505 11863724 ~ 11891114 (+)
CI01000004_11776595_11786233 STARD3NL coding upstream 515702 11776419 ~ 11786917 (+)
CI01000004_12331486_12332789 NA coding downstream 25971 12330840 ~ 12332997 (+)
CI01000004_12353073_12362622 KLHL18 coding downstream 48091 12352960 ~ 12362716 (+)
CI01000004_12362858_12363136 NA coding downstream 57938 12362807 ~ 12363136 (+)
CI01000004_12376518_12381495 NA coding downstream 71555 12376424 ~ 12381705 (+)
CI01000004_12390372_12391923 CCR9A coding downstream 85503 12390372 ~ 12392180 (+)
G31863 NA non-coding upstream 5610 12278880 ~ 12297009 (+)
G31864 NA non-coding upstream 9924 12239807 ~ 12292695 (+)
G31881 NA non-coding upstream 32130 12269833 ~ 12270489 (+)
G31862 NA non-coding upstream 45478 12220661 ~ 12257141 (+)
G31865 NA non-coding upstream 105201 12192130 ~ 12197418 (+)
G31930 NA non-coding downstream 46413 12351282 ~ 12351482 (+)
G31939 NA non-coding downstream 91522 12396391 ~ 12396626 (+)
G31952 NA non-coding downstream 157661 12462530 ~ 12463374 (+)
G31959 NA non-coding downstream 168254 12473123 ~ 12473405 (+)
G31967 NA non-coding downstream 179829 12484698 ~ 12484906 (+)
CI01000004_11666900_11667179 NA other upstream 634960 11666900 ~ 11667659 (+)
G31710 NA other upstream 660219 11637251 ~ 11642400 (+)
G30797 NA other upstream 1804831 10497376 ~ 10497788 (+)
CI01000004_08976512_08980033 TTPA other upstream 3321635 8976254 ~ 8980984 (+)
CI01000004_12646972_12652534 NA other downstream 337885 12646838 ~ 12652570 (+)
CI01000004_14036114_14036449 KIAA0040 other downstream 1718678 14035393 ~ 14039142 (+)
CI01000004_15091390_15096502 GA45B, GADD45B, GADD45BB other downstream 2786375 15091200 ~ 15097173 (+)
G34220 NA other downstream 3634488 15939357 ~ 15939950 (+)
G33815 NA other downstream 3758546 16063415 ~ 16066464 (+)

Expression


Co-expression Network