CI01000004_11776595_11786233 (STARD3NL)


Basic Information

Item Value
gene id CI01000004_11776595_11786233
gene name STARD3NL
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 11776419 ~ 11786917 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_11776595_11786233.mRNA
ATATAAAGACGTCACAAAGTCTAGATCATATGACAGCAATAACTATAAACCTTTGACCACTGTGTAAAATGCCTCCACTTTCTGTGTCCTTTCAGAACTAGGCATGACTACAGAGTCTGACTCTCCAGAAGTGTGAGTGTGAATGGAGTGACACGAGTGGACACGACTGACGAGTCATGGACAGCCAATGTGGCAGCAGTGTGGGGTCCCGGGCCACTCTAGGGGGTGTGGGCAACATCAACTCCACCCTCATTTCTTCCCGTATCGAGTCCTACGAAGCAGGAGAGAAGAAGTGCATCTCTGATGTTCGAAGAACCTTTTGCTTGTTTGTGACCTTTGACCTTTTGTTCGTCACCTTGCTGTGGATCATTGAGCTCAATCTCTTGGCTGTGTTCCGCTTTGCAGTCTTGATTCTGGCCTATGCAGTGTGTAGACTGCGTCATTGGTGGGCCATTGCGATAACTACCGCAATCACCACTGGTTTCTTAATAGTGAAAGTAGTTGTATCAAAGCTCCTGTCTCAGGGGGCGTTTGGGTATTTGTTACCCATCATCTCCTTCATTCTGGCATGGATAGAGACGTGGCTGCTGGACTTCAAAGTCCTGCCCCAGGAGGCTGGTGATGAAATCAGGTATCTTTCAGTGCAGAGTGCGCCAGATCGAGAGCCTCTTTTATACCCAGGAGGACCTGTTTCAGAAGGCCAGTTCTACTCTCCTCCTGAATCCATGGCAGACTCTGATGAAGACCTTGATGATAAACATGATCTAGAGAAGCCCATCGTCTAGCAGGTATTCAAAAAAAAAAATTATATATATGTATTTTTTTATTCCTCCATCTCTCTTAATGTAATTAATAGGATTGTATTTGCCTTTTTTATCAGGAGCTCAGAGTAAACACTGACTTCTGGAGTACAACAGCCTCTTCCAGTGCTGCTCGACCTCGGGCTGTGTGTCTTAATATGGGTTTGTGTACGTGGGTGACCAGAACTAGACAGTCACTCTGCCTTAGATCCACCATCGCCACCATCAGCAGTTTGTTGATCTGTCTCTGTATGCCCACACAAGCTCTTAGTGCAATTACATTTTTGTGTGCGTCTTAATTTCTCCCACTGAACACTGTTCTGCTTATGCAGCACTGATTGAAAAAATGAAGGATTTTAATATGTATTTTGAAGTTAATCAACAAATAATACCAGTGTTGACCACGACATTTAGCTTGTTTTCACATGACACTCTTCAACTCTGCTTCCGTGTAACAAACCGACTGCCGTCTCACATGTTCACGCAGTAAAGCTCAAATGTGTATTAACAAGACCTACATGTGAATAGCAGTAAAGTCTCAGGTCTGCACTGCCACTCTTTAGTATGTGAAGATTTCATGTTTTCCAGTTTATTCTCTCTGTTTTTTTTTTTTTTAATGATTTTTCTACCAGTCTGTGAGTGTTTGGAATGAACAGAGAGAGATGCAAA

Function

symbol description
stard3nl Predicted to be located in late endosome membrane. Predicted to be integral component of membrane. Orthologous to human STARD3NL (STARD3 N-terminal like).

GO:

id name namespace
GO:0003674 molecular_function molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_11776595_11786233.mRNA True 1469 mRNA 0.43 6 11776419 11786917

Neighbor

gene id symbol gene type direction distance location
CI01000004_11771176_11773391 EPDR1 coding upstream 2903 11771089 ~ 11773516 (+)
CI01000004_11750356_11765031 RANBP9 coding upstream 10315 11749765 ~ 11766104 (+)
CI01000004_11747225_11747971 RNF182 coding upstream 28324 11746536 ~ 11748095 (+)
CI01000004_11668089_11670426 ACKR4A coding upstream 105497 11667703 ~ 11670922 (+)
CI01000004_11666900_11667179 NA coding upstream 108863 11666900 ~ 11667659 (+)
CI01000004_11863724_11890961 NA coding downstream 76807 11863724 ~ 11891114 (+)
CI01000004_11897082_11898506 MYCB coding downstream 109315 11896232 ~ 11899215 (+)
CI01000004_12033980_12034384 NA coding downstream 246739 12033656 ~ 12034402 (+)
CI01000004_12222833_12223126 NA coding downstream 435009 12221926 ~ 12223244 (+)
CI01000004_12331486_12332789 NA coding downstream 543923 12330840 ~ 12332997 (+)
G31737 NA non-coding upstream 27658 11748525 ~ 11748761 (+)
G31727 NA non-coding upstream 69449 11706584 ~ 11706970 (+)
G31723 NA non-coding upstream 80139 11694387 ~ 11696280 (+)
G31721 NA non-coding upstream 82269 11692855 ~ 11694150 (+)
CI01000004_11547197_11557429 CACNB2B non-coding upstream 215867 11547197 ~ 11560552 (+)
G31625 NA non-coding downstream 4080 11790997 ~ 11803727 (+)
G31785 NA non-coding downstream 108936 11895853 ~ 11896129 (+)
G31758 NA non-coding downstream 113404 11900321 ~ 11931138 (+)
G31770 NA non-coding downstream 122166 11909083 ~ 11915940 (+)
G31764 NA non-coding downstream 144442 11931359 ~ 11932195 (+)
G31710 NA other upstream 134019 11637251 ~ 11642400 (+)
G30797 NA other upstream 1278631 10497376 ~ 10497788 (+)
CI01000004_08976512_08980033 TTPA other upstream 2795435 8976254 ~ 8980984 (+)
G28859 NA other upstream 3176816 8599235 ~ 8599603 (+)
G31865 NA other downstream 405213 12192130 ~ 12197418 (+)
CI01000004_12646972_12652534 NA other downstream 855837 12646838 ~ 12652570 (+)
CI01000004_14036114_14036449 KIAA0040 other downstream 2236630 14035393 ~ 14039142 (+)
CI01000004_15091390_15096502 GA45B, GADD45B, GADD45BB other downstream 3304327 15091200 ~ 15097173 (+)
G34220 NA other downstream 4152440 15939357 ~ 15939950 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_015563 stard3nl coding NC_007113.7 CM002886.2 31838442 ~ 31853345 (+)