CI01000004_11750356_11765031 (RANBP9)


Basic Information

Item Value
gene id CI01000004_11750356_11765031
gene name RANBP9
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 11749765 ~ 11766104 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_11750356_11765031.mRNA
ATATAAAAACGAAACCTTGTAATTTGTAAGTGTGCATGCATATTCCCATTGTCACAGCCATCTCTACTATCGATAACAAGTCAAGTGAGAATTAGGACATGTTATTGGTAGCTCGAGTCTAGTCATGTACCAAGTCCTCGAGGAAGTATGACTGGACCTTGAGAGAGCCAATCAGATCGCTGTATTTCACACTAACAACAAACAAAAGATCGGGGTTCCCTTCTGCTGCTGTCTTTCTGCTCCTTTTATCCAATTTAGTCTGTCCGATCGGCTGGATGTCGTCTTAAATAACAAGGATCAACTTTCTGGATGTCTGTTATTTTTTTGTAAGCTGCCGTTTCGCTGTATTGGCGTGATTAATTCTCTCTAGCGTCTTGCTAACTCGTATCAGAGAGGCTGTTTGCGGGCTAATCGCAGTTAGCTGGCTGGCTAGCCAGCCGTCAGATCCGAATAAAACAACACCGAAATCTCAGCGGCTCTTCTCCTGCGGTGTCTGACAGTGGTCGCTTTAGTCACTGGACACTGTTAGAAAGCTGTCCAGCTAAACATAGCTGGCAAGCTGTTGGTATCGACGGCAGGAATCGGATCGCGATGTCAGGACCGTCATCGGGCTGTGGGTTTCTGATGTCGGTTGTCGTTCACGGAGACTTGGCTCTCAATGAGCAGGAAAAAGAGCTTAACCAGCGGCTTAGACGCCTTTACCCGGCCGTCAACGAGCAAGAGACCCCGCTGCCCAGATCCTGGAGCCCCAAAGATAAATTCAGTTACATCGGCCTGTCTCAAAACAACCTCCGGGTTCATTACAAAGGTCATGGAAAGACCCCGAAAGATGCGGCATCTGTCCGTGCAACTCACCCTATTCCGGCTGCTTGCGGGGTCTATTACTTTGAGGTGAAAATTATCAGTAAAGGACGAGATGGGTACATGGGGATTGGCCTGTCAGCTCAAGGTGTCAACATGAACAGACTTCCAGGTTGGGACAAACACTCATATGGCTACCATGGCGATGATGGCCACTCCTTCTGCTCTTCTGGCACTGGACAGCCCTATGGTCCCACATTTACAACAGGCGATGTGATTGGCTGCTGTGTGAACCTCATCAACAATACCTGTTTCTACACAAAAAATGGCCACAGTCTAGGGATAGCTTTTACAGATTTACCGCCCAACCTGTATCCCACAGTGGGTCTACAGACCCCAGGGGAGGTCGTGGACGCCAATTTTGGGCAGCATCCCTTTGTCTTTGATATCGAGGATTATATGCGTGAATGGAGAACCAAGATCCAAGCCCAGATTGACCGCTTCCCCATTGGGGAAAGAGAAGGAGAATGGCAGGCCATGATTCAGAAAATGGTGGCCTCCTATCTGGTTCACCACAGCTACTGTGCCACCGCGGAGGCCTTTGCCAAATCAACTGACCAGGCCGTTCATGAGGAACTCGCTTCTATCAAAAATAGACAGAAGATCCAGAAGCTGGTCCTGTCCGGCAGAATGGGAGAGGCTATAGAGACCACTCAACAACTTTATCCCAGCCTGTTAGAGAGAAACCCAGACCTCCTCTTCATGTTGAAAGTCAGGCAGTTCATTGAGATGGTGAATGGCACTGACAGTGAGGTCAGGTGTCTCGGTTTTGATAGTAATTACTGTAATGGAGTTTCATCAAGTAAAGGCCACACCTCAACCCACAGTCACAAGTCTTGTCCCCCTACCCTGCCAAGTCCCGAGCTTGGTGTCCTGAATGGCAGTCGGGGCCAGCAGACCAACGTGAGCAGTACTGAGGTGGAGATGGAGGTTGATCACTTCTCAAACGGAGTGTCTGAATCCTCTTCAAATGGATTTCTGAATGGCAGCTCTACACATGGGACAGAGCTGGAGGATTGTGATGCAGATATGGAAGTGGAAAGCGCTCAGTCTAAGAGGCAGTTGTGCGGTGGGAGCCAGGCAGCCATCGAGAGGATGATCCAGTTCGGCCGAGAGCTACAGAGCATGAGCGAACACTTGCGCCGTGAGCGGGGAAAAAACTCAGCCAATAAGAAGATGCTCAAGGATGCATTCAGTTTGCTGGCATATTCAGATCCATGGAACAGCCCCGTTGGCTACCAGCTAGACTCCATCCAGAGAGAACCTGTCTGCTCTACACTCAACAGTGCAATATTAGGCTCATACAATATTGATATCATGCTTAAAACTGCATCTTGTGTATCTGAGCCAAAAAAGCCTTCTTTTCCTGAAACTAAGCGTCTAGATGCTTATTGTCAGGAAAAACAGGATAATATTTCCAAGACTCATAACCTGCCAAAGCAGCCTCCCTTGGCGCTCGCCGTCGGCCAGGCAGCTCAGTGTCTGTCCCTCATGGCTCGCACGGGCAGCGGATCCTGCGCCTTTGCATCAGTGGATGATTACCTGCACTAACCCCTGGACAATCATCCCTATAAATGACCACGTGAAAGAGGCCCACATCATCCCAGTCCATCCCAGACTCCCAAAAAAAAAAAAAACTGGGGCCAGCTTTGGCCTGATGTACTGAGCCTTCACATGGCCAGACCCATCCTGGCTCTCTGACAAGACTGGATCCTCCTCACTCGGGCCTAAACTGGGCCTAAAGACACATTAGGAAGAGGGGTCCTTAGAAGTCAGATAAAATCCCCAATCATTATGGTCTTCTTTATTTTTTTTTTTCCTTTTGTCTTTTTTTATTTTGGGGGAGGGGAGGAGGTGTTGGGTGGGGGGTGCAGCAGGCTCTGATTGTTTGTTTCCTAATTTACAAGGCATGAGGAAAATTATTATGACATAATTAATGTTATTATCAGTAAACTTGCATATAAGATATATTTGTTCTTGGTTGAAAGCTGGCAGAGTGAGCGAGACCGAATAACTAAGGTCCCACTGCAGCAACACCCTGCTATTTTCAGGTCTCAGCTTGTGTACTTTACCATTTAAAAAAAAAAAAAAAAAGAAAAAAGAAAAAATATTGAAATTATATTAACACGAGGAGTGGAACATTTAGTTATCTTACAGTAAAAAAATTAAAACCGAGAAAACCTAACACTGCTGGAGTCATCCTTAGTGGTGGTATTTAGTATAGAGCGTTAGTGTGAGCTGTATGAGTTATGCCCTTTTTTTTGTGCAAGCGCACCCTCCCTCTGCCAACTGCACAGCAGGATTGATGCAATGTTTGGACACTTTGATTTGTAATTGTATTGATGTCTATGGTCTTTTCATCCACCCAATCCCTTACTTCATCTTTTAAAAAAATCCGTATTCAGGCGTTCTCTCATCATCGTTGCCTGCACTGTGTTTTTGTGCAGTTTGGATGTGCGACAGGAACATGGTGAAGTTAAGGTCATATCCAGTCTCTGAGAGGCAAGCCTGCTCCATTGTTTTTTCTCCTCTTGTTTACCAGTCAGTCCCTCAGACCATCAGTACTTTTAAAACAAGGAGAATGGTACAGTATTGTCATCAACACTGTCTTATCATTTTCAGTA

Function

symbol description
ranbp9 Acts upstream of or within retina development in camera-type eye. Predicted to be located in nucleus. Predicted to be active in cytoplasm. Is expressed in adaxial cell; brain; olfactory placode; retina; and somite. Orthologous to human RANBP9 (RAN binding protein 9).

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_11750356_11765031.mRNA True 3485 mRNA 0.47 15 11749765 11766104

Neighbor

gene id symbol gene type direction distance location
CI01000004_11747225_11747971 RNF182 coding upstream 1670 11746536 ~ 11748095 (+)
CI01000004_11668089_11670426 ACKR4A coding upstream 78843 11667703 ~ 11670922 (+)
CI01000004_11666900_11667179 NA coding upstream 82209 11666900 ~ 11667659 (+)
CI01000004_11622516_11634475 NA coding upstream 114840 11622516 ~ 11634925 (+)
CI01000004_11608619_11618346 MALRD1 coding upstream 131338 11608619 ~ 11618427 (+)
CI01000004_11771176_11773391 EPDR1 coding downstream 4985 11771089 ~ 11773516 (+)
CI01000004_11776595_11786233 STARD3NL coding downstream 10315 11776419 ~ 11786917 (+)
CI01000004_11863724_11890961 NA coding downstream 97620 11863724 ~ 11891114 (+)
CI01000004_11897082_11898506 MYCB coding downstream 130128 11896232 ~ 11899215 (+)
CI01000004_12033980_12034384 NA coding downstream 267552 12033656 ~ 12034402 (+)
G31737 NA non-coding upstream 1004 11748525 ~ 11748761 (+)
G31727 NA non-coding upstream 42795 11706584 ~ 11706970 (+)
G31723 NA non-coding upstream 53485 11694387 ~ 11696280 (+)
G31721 NA non-coding upstream 55615 11692855 ~ 11694150 (+)
G31690 NA non-coding upstream 183610 11515811 ~ 11566155 (+)
G31625 NA non-coding downstream 24893 11790997 ~ 11803727 (+)
G31785 NA non-coding downstream 129749 11895853 ~ 11896129 (+)
G31758 NA non-coding downstream 134217 11900321 ~ 11931138 (+)
G31770 NA non-coding downstream 142979 11909083 ~ 11915940 (+)
G31764 NA non-coding downstream 165255 11931359 ~ 11932195 (+)
G31710 NA other upstream 107365 11637251 ~ 11642400 (+)
G30797 NA other upstream 1251977 10497376 ~ 10497788 (+)
CI01000004_08976512_08980033 TTPA other upstream 2768781 8976254 ~ 8980984 (+)
G28859 NA other upstream 3150162 8599235 ~ 8599603 (+)
G31865 NA other downstream 426026 12192130 ~ 12197418 (+)
CI01000004_12646972_12652534 NA other downstream 876650 12646838 ~ 12652570 (+)
CI01000004_14036114_14036449 KIAA0040 other downstream 2257443 14035393 ~ 14039142 (+)
CI01000004_15091390_15096502 GA45B, GADD45B, GADD45BB other downstream 3325140 15091200 ~ 15097173 (+)
G34220 NA other downstream 4173253 15939357 ~ 15939950 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_015561 ranbp9 coding NC_007113.7 CM002886.2 31806602 ~ 31827960 (+)