CI01000006_10499329_10508831


Basic Information

Item Value
gene id CI01000006_10499329_10508831
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 10499240 ~ 10509655 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000006_10499329_10508831.mRNA
ATAAGCAGTAGCGGCTCCAGAGATTGTATTATTATAGGGAGATGAGAGGGTCTGTATCTCTTATCATTGGAGAAAGCGTAACAGCTAACTTAATCACATGCGGCACCTCTAAAGCCCCGGGTATACTTCACCCCGTCCGCGTGCAGCCCAAATTGAGACCACGTGGACGGTGCACGTGCAACAGGACAGAAGAGTCCACTAGGTGGCAATAAGCACAGTACTGAGCACAATGTGCAGTCGTCGAAGAAGAGTTTGTAAAGAGCGATTCAAAAACAAGACGAGTAAACTCAGAAGCATGCATTCTCCATCGTTTTTGATTCCTGTTCTCTTGGTGTGTCTTCTGAACTGTGTTGCAATGGTGGATGCACTGTTTTTCTTCTCCGATCCTGCCCAGCGAATGTCCCGTTGATGACACGATGTCTGGTAAAGAGTATAGAATAAATTGTACTGCGCATGTAAAGTATACCCAGGGCTTAAGCCTATAGTGTAATGGCAGTGACATCAGTGCCCGCCGTTCAAAGCTCTTTCCCTGCCTACAGCCAGAGCCGGAGTGTTAGCATTAGCCGTTACACTGTTTTGGCTAAAGGTTGCAGGCTTGCCTTCCAGTGGCTTTGGCGGCTCCTGGCCGTAAATTTAGGTAGGGCAGACTGGAGAGGGCACATGCTAAAACACATTGGTTTCTAGATAATCTACACCATAGAGTGTCTTTAAGTGGATGAATATTTTTCATTTATGGTGCACTTTCAACCTTATACTTACACCTATCAGTATAATGTTTACTTCATTAAAGGTCAGTTATCCATGCTATTAGAAGTTGACCCATTATGCATGACAGTGTCTGCAGTGCCCCACAAGTATCATGTGATCTCAACTTAACTTTTGCATTTTCAACAGGTCTCTTTACCCTCACATTGTGTGTCCCTCAGTATGTCTTTGTGAATGAATCCAAGACTTGGGCAGAAGCTCAGAGATACTGTAGAGATAAATACACTGATCTGGCCACCACTGAGAATAACCAACAGACGGTTCAGTTATTGGACACAGTTAAAGATGATTCCATTGATCTGGCCTGGATTGGACTCTATGATGATCTAAGCAGTTGGAAATGGACTCTAGAGGACAGTGATTTCTTCAACGTGGGAGGGAAGGAGTTCAGGAACTGGTATAACCGAGGACCAGACAATTCTGGAGAACAAAGTCTGTGTGTGTATATGAACAGTGGGAGATGGTATACAGCAGACTGCTCCAATACATTTTATCCTAGCGTCTGCTATGATGGAAGACAAAATGCCAGTGCTACTTATGTTTTAATTTACCAGTACAAAACCTGGACTGAAGCTCAGAGTTACTGCAGAGAACATCACACAGACCTCGTCAGTATCAGGAATGAGGCTGAAAACCAGAAGGTCCAGTATTTATTACGGAATAATTATTATTACGGTGTTTGGATTGGACTGTACAAAACCAGATCTTGGTCAGATCAGAGCAACTCTTCATTTAGTTACTGGAGCACATGGCAACCAGATGCTGCAGGATCCTGTACTGTAGTCTCATTCAGTGACTCTGGGAAATGGACAGATGAATACTGCAATGATGCATTTCCTTTCTTTTGTCACAATGGTAGAGAAAATGCTTCTCAGAAGTATGTTTTGATATACATGAGTAAGACCTGGACTGAAGCTCAGAGCTACTGCAGAGAGAAGTACACAGATCTGGCCAGTTTGCAAGAGGAGCTGATCAGACTCGGACTTCCCAGCAACGCCACCATGCATTTGAGAGACTATCGTAAGATCAAACCCTGACGTAGGAGGACAACGCTTTGCAGTTTCCAATAAA

Function

NR:

description
Si:ch211-282j17.1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000006_10499329_10508831.mRNA False 1836 mRNA 0.44 4 10499295 10509655

Neighbor

gene id symbol gene type direction distance location
CI01000006_10453630_10483241 NA coding downstream 15289 10453613 ~ 10484006 (-)
CI01000006_10402704_10447782 NA coding downstream 50194 10402695 ~ 10449101 (-)
CI01000006_10372387_10387314 NA coding downstream 111693 10372129 ~ 10387602 (-)
CI01000006_10349084_10362629 NA coding downstream 135708 10348973 ~ 10363587 (-)
CI01000006_10211545_10223229 SMARCB1A, SMARCB1B, SMARCB1, SMARCB1.S coding downstream 275459 10211431 ~ 10223836 (-)
CI01000006_10676705_10699710 NA coding upstream 166712 10676367 ~ 10699882 (-)
CI01000006_11320839_11338355 STXBP1, STXBP1A coding upstream 810807 11320462 ~ 11338355 (-)
CI01000006_11388077_11391485 NA coding upstream 877839 11387494 ~ 11391485 (-)
CI01000006_11459706_11462546 NA coding upstream 949633 11459288 ~ 11462605 (-)
CI01000006_11530728_11535297 NA coding upstream 1020711 11530366 ~ 11535900 (-)
G47410 NA non-coding downstream 190194 10308880 ~ 10309101 (-)
G47053 NA non-coding downstream 234975 10264081 ~ 10264320 (-)
G47035 NA non-coding downstream 266896 10232179 ~ 10232399 (-)
G47024 NA non-coding downstream 304654 10194432 ~ 10194641 (-)
G47444 NA non-coding upstream 8528 10518183 ~ 10520351 (-)
G47520 NA non-coding upstream 151360 10661015 ~ 10707544 (-)
G47544 NA non-coding upstream 221790 10731445 ~ 10732231 (-)
G47558 NA non-coding upstream 243503 10753158 ~ 10757542 (-)
G47568 NA non-coding upstream 267163 10776818 ~ 10777674 (-)
CI01000006_07500281_07507754 NA other downstream 2988339 7500246 ~ 7507976 (-)
CI01000006_06974359_06976736 NA other downstream 3522423 6973224 ~ 6976872 (-)
CI01000006_04560607_04560993 NA other downstream 5937227 4559509 ~ 4562068 (-)
G43549 NA other downstream 6143867 4352510 ~ 4355428 (-)
G47658 NA other upstream 521256 11030911 ~ 11033127 (-)
CI01000006_11651067_11653761 SMD3, SNRPD3, SNRPD3L, MGC52856 other upstream 1140708 11650363 ~ 11654424 (-)
CI01000006_12348300_12348961 GLRX other upstream 1824754 12347180 ~ 12349383 (-)
CI01000006_12569291_12581457 CELL, CEL.2, CEL.1 other upstream 1841104 12569205 ~ 12582487 (-)

Expression


Co-expression Network