G137646


Basic Information

Item Value
gene id G137646
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 133158 ~ 134296 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU186229
CTCTCACAAACCAGCTCTCACAAACCAGCTCTCACAAACCAGCTCTCACACACCAGCTCTCACACACCAGCTCTCACACACCAGCTCTCACACACCAGCTCTCACACACCAGCTCTCACACACCAGCTCTCACAAACCAGCTCTCACACACCAGCTCTCACAAACCAGCTCTCACACACCAGCTCTCACAAACCAGCTCTCACACACCAGCTCTCACACACCAGCTCTCACACACCAGCTCTCACACACCAGCTCTCACACACCAGCTCTCACACACCAGCTCTCACAAACCAGCTCTCACAAACCAGCTCTCACACACCAGCTCTCACTGAACCCCGTCCGTTTCTTT

Function

GO:

id name namespace
GO:0006030 chitin metabolic process biological_process
GO:0006032 chitin catabolic process biological_process
GO:0006040 amino sugar metabolic process biological_process
GO:0042737 drug catabolic process biological_process
GO:0046348 amino sugar catabolic process biological_process
GO:1901071 glucosamine-containing compound metabolic process biological_process
GO:1901072 glucosamine-containing compound catabolic process biological_process
GO:1901136 carbohydrate derivative catabolic process biological_process
GO:0006022 aminoglycan metabolic process biological_process
GO:0006026 aminoglycan catabolic process biological_process

KEGG:

id description
ko00520 Amino sugar and nucleotide sugar metabolism

RNA

RNA id representative length rna type GC content exon number start site end site
TU186229 True 349 lncRNA 0.54 3 133158 134296

Neighbor

gene id symbol gene type direction distance location
LOC103021456 ptch2,LOC107557169,LOC107700991,LOC107720855,LOC107599897,LOC107722076 coding downstream 9486 95083 ~ 123672 (-)
LOC111194215 NA coding downstream 43628 88370 ~ 89530 (-)
cenpl cenpl coding upstream 38945 173241 ~ 176666 (-)
brinp2 brinp2,LOC107720848,LOC107658350,LOC107700985,LOC107562711,LOC107722070 coding upstream 152054 286350 ~ 423788 (-)
pappa2 NA coding upstream 583727 718023 ~ 750580 (-)
tnn NA coding upstream 857597 991893 ~ 1026466 (-)
trove2 trove2 coding upstream 955941 1090237 ~ 1102807 (-)
G137611 NA non-coding downstream 54795 75676 ~ 78363 (-)
G137610 NA non-coding downstream 63413 68959 ~ 69745 (-)
G137648 klhl20,LOC102300935 non-coding upstream 27400 161696 ~ 163945 (-)
G137659 NA non-coding upstream 59058 193354 ~ 193998 (-)
G137710 NA non-coding upstream 146820 281116 ~ 386357 (-)
G137719 NA non-coding upstream 284465 418761 ~ 420399 (-)
G137721 NA non-coding upstream 291939 426235 ~ 426528 (-)
LOC111194217 pappa2,LOC107722077,LOC107678935,LOC107726923,LOC107658303,LOC107558342 other upstream 561607 695903 ~ 717323 (-)
G138199 plk3,LOC107563563,LOC107722069,LOC107658359,LOC107726922,LOC107557223 other upstream 916236 1050532 ~ 1101493 (-)
LOC103042176 zgc:55943,c7h1orf21,LOC103042176,LOC108430752,LOC107709356,LOC107671715,LOC107559369,LOC107593773,LOC107727521 other upstream 2343399 2477695 ~ 2486894 (-)
LOC103045355 LOC108430731 other upstream 2916104 3050400 ~ 3062759 (-)
LOC103025790 NA other upstream 2961305 3095601 ~ 3114686 (-)

Expression


Co-expression Network