G137648 (klhl20,LOC102300935)


Basic Information

Item Value
gene id G137648
gene name klhl20,LOC102300935
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 161696 ~ 163945 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU186233
CTGTGATGTGTAGGCGAAGTCGATGAGCAGCTCCATGGCGCGCTCGTCGATGTCGCGGATGACCACCTCCGTCTGGCGACTCTCAGCGAGCTCCCCGGTGAACATGGCCCTGAAGTAGGGGCTGCAGGCCGACAGGATGACGCGGTGAGCGTAGATCTTCTTGGCgcccaccaccagcaccacgtCGCACAGCTCCCGGTGTTTGCGCAGCAGGTTAATGACCTCCAGCGTCTGGCGCGGGTGCTTGTCCGAGACGTAGGGCATGCGGGCCGGCTGCGGCACGCCCTCCGGCAGCTTGTTGGGGTCACCCAGAGTGCAGCGGCTGGTGATGTCCATGGCGGCGGAGTCCGAGCGCACACAGGCGCTCCAGAGTGGTGGTGTAAGTCTCCGCGGGGACGAGCCGCTCATTAAACTGGGCTGAAAGACACAGAACCGAGGCTGGGGGCGGATTCAGAGCGGAGCCGCTGCTGCTACTACGAGTTATAGAGAGGGGTCCGGTCCACAGCGCAGCTCCGCCATCTGCTGATCCGCGCAGGGAAGCCCAGTCCCGGCTCAGCTCACCGGCTCTCTACCGTCACACCGCGGGGCTCCGGGGATCAGATTAAAGAGACAGTCTGCAGGTTTTTGGTGAGAATGTTTAATTGCaggttttaaaagtactttaagCTAACTCTGTGCACTGTACTGGATAAATCTGGTGATTATAGAGAGGACTGTTTAgctctttattttaattctgtgtttatttggtgTAATGATGTGAT

Function

symbol description
klhl20 Predicted to be involved in protein ubiquitination. Orthologous to human KLHL20 (kelch like family member 20).

NR:

description
PREDICTED: kelch-like protein 20 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU186233 True 764 lncRNA 0.58 2 161696 163945

Neighbor

gene id symbol gene type direction distance location
eif2b3 eif2b3,ei2bg,LOC107720854,LOC107700990,LOC107722074,LOC107599900 coding downstream 15491 127085 ~ 146205 (-)
LOC103021456 ptch2,LOC107557169,LOC107700991,LOC107720855,LOC107599897,LOC107722076 coding downstream 38024 95083 ~ 123672 (-)
LOC111194215 NA coding downstream 72166 88370 ~ 89530 (-)
cenpl cenpl coding upstream 9296 173241 ~ 176666 (-)
brinp2 brinp2,LOC107720848,LOC107658350,LOC107700985,LOC107562711,LOC107722070 coding upstream 122405 286350 ~ 423788 (-)
pappa2 NA coding upstream 554078 718023 ~ 750580 (-)
tnn NA coding upstream 827948 991893 ~ 1026466 (-)
trove2 trove2 coding upstream 926292 1090237 ~ 1102807 (-)
G137646 NA non-coding downstream 27400 133158 ~ 134296 (-)
G137611 NA non-coding downstream 83333 75676 ~ 78363 (-)
G137610 NA non-coding downstream 91951 68959 ~ 69745 (-)
G137659 NA non-coding upstream 29409 193354 ~ 193998 (-)
G137710 NA non-coding upstream 117171 281116 ~ 386357 (-)
G137719 NA non-coding upstream 254816 418761 ~ 420399 (-)
G137721 NA non-coding upstream 262290 426235 ~ 426528 (-)
G138136 NA non-coding upstream 321752 485697 ~ 506438 (-)
LOC111194217 pappa2,LOC107722077,LOC107678935,LOC107726923,LOC107658303,LOC107558342 other upstream 531958 695903 ~ 717323 (-)
G138199 plk3,LOC107563563,LOC107722069,LOC107658359,LOC107726922,LOC107557223 other upstream 886587 1050532 ~ 1101493 (-)
LOC103042176 zgc:55943,c7h1orf21,LOC103042176,LOC108430752,LOC107709356,LOC107671715,LOC107559369,LOC107593773,LOC107727521 other upstream 2313750 2477695 ~ 2486894 (-)
LOC103045355 LOC108430731 other upstream 2886455 3050400 ~ 3062759 (-)
LOC103025790 NA other upstream 2931656 3095601 ~ 3114686 (-)

Expression


Co-expression Network