G138383 (cmpk1,cmpk,LOC107719256,LOC107681787,LOC107671754,LOC107709354,LOC107559368)


Basic Information

Item Value
gene id G138383
gene name cmpk1,cmpk,LOC107719256,LOC107681787,LOC107671754,LOC107709354,LOC107559368
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 2522526 ~ 2529626 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU187257
TCAGTGGCTAGCTAAAAAaagctaactttcccattctACCTTAAATAGTACAACAAAAGGcacaggggctgcagcatttaaggcagaatgaacaataataattataataattcatttctgcacATCTACCCCCTTTATTATATGAAGACATACATTTATACAGCCCTAAAGTGAaatagttaaccagcagcagctaagctaactaaactttagcgctcctgatgacaTATCTATCGGGTGCTTAAGGTGGAGGATTTCCCCTCTTTACACTCGAAAAGAAAAGGTAAGGTAAGTATCAGGGCAAAATGGGTAAAATGGGATGAAGGTACAGCCTTAGAAGTCTAAGAGTAAACTTAAAGTAAATCTTAAAGAAGAAGCACAAAATTACtagatctcagaaagctgtgggaaagcggaggtgtgctattcattgAAGGGAAGtcctttttatcatgttttactacaacaaaagtcaattttacaccagagttcttctttaatAGTGTCTCTGCATTAAAAACATCATTTAGTCAAGACTTGAGCTTAACCTGGGTCTAGAAATCCAGCCTAAAATGCTGCAAAGTTAAGATCTAGGCCAGTGTTTCCTCAGCTCCAGTCAGATAATATGCATTTCACAGTTGTGCTTTAATCTTTATATTTGTAGGAATGAAGTCCTATTTGAACTGGATAAGGTGTTCTAGAcctggaaaaaaacacagaaccttACAGTAGAAATGAACTATATGACTGCAGCTGGAGAAACACTGGTTAATTCATACCGCTTACAGTTACTGTGATCTGGATGCAGCAGCTCTATGCAGTCAGTGCTTGGCCCCCTTTCATTGCTGTTCTGGCCTTAGTTAGACGTAGTTAAAGATAATATGGTTCCATCGTACAGACGAATCAAACTCTCAAACACACTTTAGGTCACATAAACACGGCGCAGAAGCTACCGCACACCATTCCAATGGAAACAGTCTCTTTACACTTTCACTCTACTGCTCTAATTTTTGTTCCTCTCCAGCGTTGTATTAAGCAGGTATGGCTGCAGGGCGACCAAACGTCTAGCCCCGCCCccgtccacacacacactcactcacacacacatacatacatacatacatatgcacacacccaacacatacacacacattcatacccACACACTCGCGACAacaatgacaaaaaacaaaaaacacatttaaatgaataaaaagataatcatgtaaataaatgaagcaTAGTGTTGCTGACATCAATAAAAAGAACATTCTGAAGATTTGGGGCTGATGGCACTTCAGCAGATGGAAGTTTTGGAGCTCTAGCCTTCCTTATCGAGGACTTTCTTCACGTCAGCAAACACCTCGTCCACATCACGCGAGGCATCAATGCAGCGCACTTTACCCTGCTGCTCGTACTGCTCTATGATTGGCCGAGTGGACTGCAGGTAGGTCTGGATCCTTTTCTCCAGACTCTCTCTGTTATCGTCTGTGCGGCCACTGCTCTTCCCTCTCTCCAGACACCTGTCGATACACACTTCATTACTGCAGtcaaaaaagagaacaaatttgACGTCGGCTTTGCCGTCCATGACTGTGGTCCAGCCCTGCAGGTTGTCTTGGTTTCGAGGAAATCCGTCAATAAGAAATCTGAACTTGTTCTCGTCCGCCTTCATCGTTTCCTCCATGGCCTTCCTCAGCAGGTTGATGGTGATCTCCACAGGAACGATCTTGCCCTCTTTGATGTAGCTGTCGATGAGCTGCCCGAACTCGGAGCCCGTGCGGCTGCGCTCCTCTCTCAGCAGATCTCCAGCAGACAGGTGAGTGTAGCTGTAATTCTGCACTATTCTGGCGCACTGTGTCCCTTTGCCCGCGCCCGGACCGCCCAGCACGAACACGACCTGCGGCTTCATGGCGAGCGCGATCCCACGCAGAGCGCTCGAGACTTTCTCACGCGAGCTGCGGATCAGACCGGCGATCATACACCGGCGCGGGGAGGGCGGGGGAGCGAGCGAGCGATATACCGACAATACCGGAGTCCGGAACCGCAACCTCCACCTCAATCACCGGGAGCTGCGTGGCGAGGAAGACGTGCCGCCTAGA
>TU187259
TCAGTGGCTAGCTAAAAAaagctaactttcccattctACCTTAAATAGTACAACAAAAGGcacaggggctgcagcatttaaggcagaatgaacaataataattataataattcatttctgcacATCTACCCCCTTTATTATATGAAGACATACATTTATACAGCCCTAAAGTGAaatagttaaccagcagcagctaagctaactaaactttagcgctcctgatgacaTATCTATCGGGTGCTTAAGGTGGAGGATTTCCCCTCTTTACACTCGAAAAGAAAAGGTAAGGTAAGTATCAGGGCAAAATGGGTAAAATGGGATGAAGGTACAGCCTTAGAAGTCTAAGAGTAAACTTAAAGTAAATCTTAAAGAAGAAGCACAAAATTACtagatctcagaaagctgtgggaaagcggaggtgtgctattcattgAAGGGAAGtcctttttatcatgttttactacaacaaaagtcaattttacaccagagttcttctttaatAGTGTCTCTGCATTAAAAACATCATTTAGTCAAGACTTGAGCTTAACCTGGGTCTAGAAATCCAGCCTAAAATGCTGCAAAGTTAAGATCTAGGCCAGTGTTTCCTCAGCTCCAGTCAGATAATATGCATTTCACAGTTGTGCTTTAATCTTTATATTTGTAGGAATGAAGTCCTATTTGAACTGGATAAGGTGTTCTAGAcctggaaaaaaacacagaaccttACAGTAGAAATGAACTATATGACTGCAGCTGGAGAAACACTGGTTAATTCATACCGCTTACAGTTACTGTGATCTGGATGCAGCAGCTCTATGCAGTCAGTGCTTGGCCCCCTTTCATTGCTGTTCTGGCCTTAGTTAGACGTAGTTAAAGATAATATGGTTCCATCGTACAGACGAATCAAACTCTCAAACACACTTTAGGTCACATAAACACGGCGCAGAAGCTACCGCACACCATTCCAATGGAAACAGTCTCTTTACACTTTCACTCTACTGCTCTAATTTTTGTTCCTCTCCAGCGTTGTATTAAGCAGGTATGGCTGCAGGGCGACCAAACGTCTAGCCCCGCCCccgtccacacacacactcactcacacacacacacacacacacacaca

Function

symbol description
cmpk Predicted to enable UMP kinase activity; cytidylate kinase activity; and nucleoside diphosphate kinase activity. Predicted to be involved in nucleoside phosphate metabolic process. Predicted to act upstream of or within 'de novo' pyrimidine nucleobase biosynthetic process; phosphorylation; and pyrimidine nucleotide biosynthetic process. Predicted to be active in cytoplasm and nucleus. Is expressed in neural plate and notochord. Human ortholog(s) of this gene implicated in lung non-small cell carcinoma. Orthologous to human CMPK1 (cytidine/uridine monophosphate kinase 1).
cmpk1 Enables nucleoside diphosphate kinase activity and nucleoside monophosphate kinase activity. Involved in nucleoside diphosphate phosphorylation and nucleoside triphosphate biosynthetic process. Located in nucleolus and nucleoplasm. Implicated in lung non-small cell carcinoma.

NR:

description
UMP-CMP kinase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU187257 True 2102 lncRNA 0.46 6 2522526 2529626
TU187259 False 1123 lncRNA 0.40 2 2526736 2529626

Neighbor

gene id symbol gene type direction distance location
LOC103043115 fam78ba,LOC108430701,LOC107593884,LOC107681754,LOC107709346,LOC107671676,LOC103396126,LOC101481240,LOC103357776 coding downstream 1629 2515104 ~ 2520897 (-)
imp3 imp3,LOC107671714 coding downstream 31373 2488010 ~ 2491153 (-)
LOC103043517 abi1b,LOC108430754,LOC107671751,LOC107559371,LOC107681778,LOC108267643,LOC101170217,LOC102308235,LOC103354342 coding downstream 58237 2447385 ~ 2464289 (-)
LOC107197650 NA coding downstream 81059 2437569 ~ 2441467 (-)
LOC103043218 ap2m1,ap2m1a,LOC108430755,LOC107671693,LOC107593770 coding downstream 101002 2407274 ~ 2421524 (-)
LOC103043419 LOC108430750 coding upstream 2632 2532258 ~ 2542943 (-)
tctex1d1 tctex1d1 coding upstream 34904 2564530 ~ 2567513 (-)
LOC103043822 LOC108430747,LOC108267185,LOC107719259,LOC107593781,LOC107681818,LOC107671695 coding upstream 41780 2571406 ~ 2588323 (-)
LOC103044624 LOC108430746,LOC107719260,LOC108267485,LOC107593782,LOC107681771,LOC107671696 coding upstream 80084 2609710 ~ 2672633 (-)
LOC103045751 leprot,LOC108430744 coding upstream 154034 2683660 ~ 2687643 (-)
LOC103040233 NA non-coding downstream 127641 2392597 ~ 2394885 (-)
G138366 NA non-coding downstream 208376 2313934 ~ 2314150 (-)
G138358 NA non-coding downstream 216145 2233542 ~ 2306381 (-)
G138343 NA non-coding downstream 562802 1958703 ~ 1959724 (-)
G138342 NA non-coding downstream 593017 1929123 ~ 1929509 (-)
G138399 NA non-coding upstream 24526 2554152 ~ 2570647 (-)
G138408 NA non-coding upstream 44694 2574320 ~ 2594954 (-)
G138416 NA non-coding upstream 89381 2619007 ~ 2656437 (-)
G138414 NA non-coding upstream 150418 2680044 ~ 2748727 (-)
G138415 NA non-coding upstream 179770 2709396 ~ 2745139 (-)
LOC103042176 zgc:55943,c7h1orf21,LOC103042176,LOC108430752,LOC107709356,LOC107671715,LOC107559369,LOC107593773,LOC107727521 other downstream 35632 2477695 ~ 2486894 (-)
G138199 plk3,LOC107563563,LOC107722069,LOC107658359,LOC107726922,LOC107557223 other downstream 1421033 1050532 ~ 1101493 (-)
LOC111194217 pappa2,LOC107722077,LOC107678935,LOC107726923,LOC107658303,LOC107558342 other downstream 1805203 695903 ~ 717323 (-)
LOC103045355 LOC108430731 other upstream 520774 3050400 ~ 3062759 (-)
LOC103025790 NA other upstream 565975 3095601 ~ 3114686 (-)
gipc2 gipc2,dnajb4,LOC108430720 other upstream 627124 3156750 ~ 3175353 (-)
G138708 NA other upstream 1303095 3832721 ~ 3833670 (-)
LOC103047802 pcolce2a,LOC108437522,LOC108268019 other upstream 1318096 3847722 ~ 3861356 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000004_01814534_01821755 CMPK1, CMPK coding CI01000004 null 1813782 ~ 1821755 (-)
bowfin (Amia calva) AMCG00005377 NA coding CM030140.1 CM030140.1 22224572 ~ 22229979 (+)