G138650 (miga1,LOC107708777,LOC107722319)


Basic Information

Item Value
gene id G138650
gene name miga1,LOC107708777,LOC107722319
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 3540971 ~ 3568654 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU187634
ttcacatttttttatttgctcatTTATTTGTACAGCTCACAATTAAACACAGTACAGAAAAAACAGTTTTCTTTAAGAACTTGACAAAAACAAGTCCATTTTTCTAGTACAAatatttagctttagcattttgCTAACACACAGGCTGCTACAGCCACTCTGCTGTGTACATATTAACACAAAtggaccacaaaaaaaaattccaagTAAAAGAAAACCCACTGGTTACTTTTGCGCATTTGGGCCACCACACATGCACTAACATTAAGGCTCATACAATCTGTTAAATGATCAATATGGAACATTAACAACAGCCTTGTACAAACatatgctaatgctagctgggTGGTAATGCCACTGTGTAACAAATGAGAGAAGAGTTCCATACAGTATATGGCTTAAGAGTTTACAGTAATAAAGAAGATGATCAGCTTATGTCTTGTGAACGTCTGCAGCTTTGGGCTTGTGTGTGAAGGCTTATCAGTAAGCTGCTTTCTGTTATGAGTTGGATTTTACATGATAAATCTTAAGTTTAGAGTTAAACTTagtgttaaaaatgaaaaatgagaaaaaaaaatatataatagtaacCCAGATCTAATCTCATTCTGCCCTTATGTGTCTTTTATGTGATTTAGcaatcattttaaatgatcCATATCCATTTTATCTTAAATTTtcctattttaattttttacccGATATTACTTCATAACCATACAGGTGGGTTTACATAATCTTTTCCcaaccttttctttttatttttatcccagtacaggattagtttctcaggggggaccttctactcagtaataaaagtcctgcatccagactgcaattgaaaaaacaggaggaccagtgagtttttggctttctcagtcacatgacatcacagcgttcagtagctcctccatttccactcgcttttgtgtgtttttacgtggatctctgtggaaacgtgtGCCCAacgtgtaattatggtgcgcggccgtggacaaatagctattttattaaacacgaggaACCGAAACTCAGATGTgcgtctggacgggactaaaattactggaggaccacggagtttagagaaaaacagtagataatttaaCCTGTAAtcttctcagaggacgtctgagaaaaacacatatatgaggacccccataaaagataaaatgtccTCAGGagcccctgagaaactaatcccatctggaaAGGGCTTTAGAATTATTATTGTGAATGGGCTTATATGTGCAAATGAAATTTTTTCCCACATCACAAAAACAATAGATTGAACAATTTACCATGGCGTCAGTTTCCAGTTGAACATTTGACAGCAAGTTATAAAGcacactgtactgtataaaATGAGAACAATTCATAATACAGGTAAAAACTTTTTCAAGCCAAAGGTTTAAGACAAATTGAAACCATTTTAACATTCACTAAgcagaaagcaaaaaaacaaaaaaaaacaaaacaaaaaggttttaatacttaaaatagtaaaacagaccaattaaataaataacttgtacagtaaattgtgtgTGAAGTGCGTGTCAATGCTAATTTCAAAAACAGTCATAATCGTCCAGCCTATTGCTCTCAATCATTTACCACTACTGCAGGACATCACGAGCGTAAAGACACGGGCGTGAGCTTATTGAACCCGGGTCTCCAGCATGGCGGTGGACACCAGGTGAAGCGGGGATCCTACGCAGCCACTGACGTGCCGAAGAGAATCAGCCCCCAGGTAGGCCAGCAGCAGCTCGGAGCGACGGTGCAGCAGGTGGAGGATATCCTCAGCGAGGGTTTCTACACTGGAGTAGCGCACATTCTCCAGGTCAAATATGTCCTTCAGGAAGAACAGGACCTGGTCCTGCAGGATCTTAAAGAAACAGCAGAAGTCATGCAGGGGACTCTTAGGACCCAGAAATCCCCACGCCAACACAGGGCTGATGTGTTCACACACCGTGTAGAAGTGAGCGATGAAGCCATCCTGCACCTTCATATGTTGTCTTTTCTGCTTCAGAACAGACCAGCAACTTGATGCGACAGCTGTCTCTTTGAAAGAGGCGTTGAGCCAGCGATTATTAACCACATTCTGGATGGAGATAGGAGGATTCTCCAAATCTTCGAAGGAATCCATCAGGATGAAGTCCAAAACGATGTCATAGAAATTCAAATGCTTAACCCCTCTGGTTGCCAGTTCTGCCTCCGTGTTCTCCCAGTGATCCGTCTGCTCCAGGAAACAGATCATGTCCTCAAAAACCTCCTCGAACCTCTTGGGGCTCTTCCTCGCTTTAACGATTATAGAGGACAAGATCTTCTTTCCTGTGTCAGCCAGAAACATCCTAGTTGCTCTTTCACATAGAATgacCTGACAGGCCTGGCGAATGCAGTGCAGCTTCGCCAGGAAATCAGTGTCCCCAAGACATTCGAGCATCTCCGTTCGGAGGACTCTACAGGAGATCTTGCCATCCTCGGCCATCTGCAGAGCTTCTTCATAGAAGGGGTAGTGGCAGAGCGAGCCGAGACCAAAGGCATTCCTCATATCCCTGTGTTCAGACAGCTCTGCTGCAGACACAAAGGAGTCGGTGGAGGCGATGCTGACAGAGTCCCTCAAACACGAGTCGTCCAAATCCTCCCTCGCCGAGACgtcagtgtgtttctCGTTGCTGGGATGTGAGGAATGGTCGGACATCCCCAGCGCTCCCTCAAACTCCTCCTGGAGGCGATAGGCCCTCTGCAGCAGAGACTCCAGCTTGTGGATGAATTCTGCACTGATGATATCCTCAACACTTTCCTCTGCTATGGCATCTCCAGCCCCCAGTTTAACTGAAGCGCAGCTGGTCTCGTCCTCCGCCAGCCGGCCACGAAACGTGAGCGCCTGCTCCCAACGACGCAGAGCCTCCTCAAACAGCTCCACGCCCATCAGGTAGAGGTTCTCTGGAGTGCTGACAGGGATGATGCTCCGGAGCTCGCCTTCCTCTGCTCTGTCCCAGCAGCTGGATCCATTAGGACACGTGCAGCTACTGCAGGAGTTCATGCTCTTCACCGAGGCCAGACTCTGCAGGGAGCCGGAGAGCTTGCTGTACAAGCTGCCATTAGGCACCGCAAGGCTGGAGAAGCTGTTCTTCGTATTCAGAGACAAAGTCAGGTTCTGCCGACTGCCGTAGACATCTTTGGTTTGGGAAGTGTGGAGAGGAAATCGAAGGCCTCCTGCTCTCTGGGCGACTGGCTTTTCTTCCTGCCTTTTCTCCTCTTGAAGTGTCGGGCGAGGAGGGCGAGCGAGACGGCGCCGAAGGCTGTGGCGGCAACCAGCTTCTTGGTGCCGGAGCTCAGGCTTACCTGGTCAACAGAGGAGAGAGACATGAAGCCCGGGTCACGCTCAGGACTCCACTCAGCCGTCCGGCTCTCACCATACCCCCAGTAGAGTGAcgg
>TU187635
GGACAGGTCAACAACTCTCAACAGTCAAAAATCCAACAATAaccagcaaaaacaaacaaaaataataatgtacattCGAGAGTTTCAACAGTACAGGAAACCATTTGTGTTTACCTCTAAGGCATGCTCCCCATTTCTCAGATAGCCTCCGATTAAGTCTTCTTTTCTACACCCCCACGAATTCTGTTGTGAACAATTTGCTCAGAAGGAAAGAGCAGATTGCATGCATACCAAAACATATGCAGCAATGCACAGCAAAAATTCAAAAACTCTCCAATTTTACTGCCAAAAAGCAAAATCATGTCTGTAACAGTTGCTACGCAaaattatcaaacaaaaaaagttcctGGTCATGATCCAACTCTATAGCATTGGTGCACATTACAATCCCTAACTCAGATCATATTATCAAAAGGGCAAAGCATGTACGAAAATTTCATTTCAAATTCAGTTCAGACAGGCCATTTCATCAACCGACAATTCAAAAAGCATTGTTGTTACTGATCTTAAGACAATGCTAGCTTATCAGAATATAGCATCAACAAAGAATTGCCCTAAACGAATAACATTAAAATTTGCAAAAATCACAGATTCCTCAGGatacattttctttaccttATAACTGGAGCCCTCGAACGGTCTATGTTCAGCGGAGGGACAGACTCAGACTCCTCCTTAGGGACAAACCTAGCTCAGGACCTGATTCTACGACCTATGCCTGCAGCATCTTCAACACTGTGAGTGAGAATGAAGGCAGCAATTTGAATTAGAACTACAGAAGGGCAATAGCACAGCGTTTAAACCAGTGACATGTGAGCATACATACATGTGTACACTTCAGCATCAATGAATTAACAGCTAAGACAGATCCCTGGTTAAACAATATTCCAACTGCATGCAGCATTGGTAAGGCAGGGAAAATGTCTACAGTGATAATGAATGAGCCATCCTAACGTAAAACACCTAAAACTAACATCAGAATGAACAAGCATTGGACATATTGGCATCGAATGAACAAGAACGGCATTTCAAAtcagacaggaaaaaaaaaaaaaaagacagaacttCTACTTTGCATGTGTGGAGTTAAATTCACATTGAGCTACACGTCAGCCAGTGACATGCAAATCATTAATATCAGTATAGATCATCCTATAGCTACTTTTATAGGGCTGTGGCTTTCAGAGCTAATGTCAACATTTTATAAAGACATGAGCCTAGATATTCTAGATtgacatttttaacaaaaaaaggtaaaatagagTCAGGTAAAATACATCATCAAGACTTTTGAGTCACAGGTTCAAACACTTGGTTTCTTAGGTTAAGCTTACCTGTGTTATTGCAGCAGAACCTAAGGTCTGGGATGACGCTGCAAGATTAGACATTGCACCGCTCACTGCGCCACTAATCAACATAGTCAAATGAATCACTTGCATCAATTTGACAGCCTTCAATGACTTAAGAAGCAATGGCaaattgcaattaaaaaaaaccatTCATAGGCAAAAATCAGACAGCCTGAAAAGTGGTAGTCGCATGTCAGCCAACATCAACATCTCAACAATATACATTGATACGGTGAGAACTGCCTAAATTACCACTGAAATCACACAGAATGCAATGGAAGAAAACTTGGCAAAACATCATCATGTCTGAtggcacttaaaaataaagaactaaaCTGACATTTCCTAACTGACCTGACTGGAACATTTgcacttattttaaaaatgtaaatgtcatTCACAGTTCATTATTTGAAATAGGATTCTCCTACAGGGACTAAGACAGTGGAAATATTGCTAAGTGTCAATTCTATCAACACGAGAATATGAACAGTCCAAATCATGAACAGGGCAAGGTCACAGGCTCAAGAGAGACATCAATATTTTTCATATCAAACCAAACCGCAGCCTAGAGACATACTtacccaaaaacatttttaataataataaaaaaggcagTTTCAGGGTAAACATTGCATCGCATCTTATGCACTAAGCAAGTACTTTAATTGGTCAAAGACAATGCAttgacagaacaaaaaaaattgggCCATTTTGTACATGTTGGTACTTACAGCAGAGGGCTCTCATTTCACTGGTGGGGTACAGCACACAGCATACACTCCTCAGCCCTTAAAAAACGCACTTCTTACAGGCCTACACTGGAGGAATGCCAACACACAACGGGCAGAACAGGGCACCTTTGCATTTGATCTGTTTAATCGCTTTAAAGGTTAAGAAATGCCagcagatatatagatatatatacgtatatgcaCTTGaatttgctttagtttttttaaaaaaggtatgtatgtattttgggACATTACAAAATTATGGAAAGGGAGCACATGGAATTTTATAATACATAATTGTTAATTGAGCACACTTCACCTGCCCTGTAAAAAACAGCAtactgagaaagagagcaacTAAAAAGCTTGCAACACTTCTACAgtcacattatatattataaaggaacatttttgtttggttttacaaaaaaacaaaaaaaaaaaaaaaaaaaaaaaaa
>TU187639
ttcacatttttttatttgctcatTTATTTGTACAGCTCACAATTAAACACAGTACAGAAAAAACAGTTTTCTTTAAGAACTTGACAAAAACAAGTCCATTTTTCTAGTACAAatatttagctttagcattttgCTAACACACAGGCTGCTACAGCCACTCTGCTGTGTACATATTAACACAAAtggaccacaaaaaaaaattccaagTAAAAGAAAACCCACTGGTTACTTTTGCGCATTTGGGCCACCACACATGCACTAACATTAAGGCTCATACAATCTGTTAAATGATCAATATGGAACATTAACAACAGCCTTGTACAAACatatgctaatgctagctgggTGGTAATGCCACTGTGTAACAAATGAGAGAAGAGTTCCATACAGTATATGGCTTAAGAGTTTACAGTAATAAAGAAGATGATCAGCTTATGTCTTGTGAACGTCTGCAGCTTTGGGCTTGTGTGTGAAGGCTTATCAGTAAGCTGCTTTCTGTTATGAGTTGGATTTTACATGATAAATCTTAAGTTTAGAGTTAAACTTagtgttaaaaatgaaaaatgagaaaaaaaaatatataatagtaacCCAGATCTAATCTCATTCTGCCCTTATGTGTCTTTTATGTGATTTAGcaatcattttaaatgatcCATATCCATTTTATCTTAAATTTtcctattttaattttttacccGATATTACTTCATAACCATACAGGTGGGTTTACATAATCTTTTCCcaaccttttctttttatttttatcccagtacaggattagtttctcaggggggaccttctactcagtaataaaagtcctgcatccagactgcaattgaaaaaacaggaggaccagtgagtttttggctttctcagtcacatgacatcacagcgttcagtagctcctccatttccactcgcttttgtgtgtttttacgtggatctctgtggaaacgtgtGCCCAacgtgtaattatggtgcgcggccgtggacaaatagctattttattaaacacgaggaACCGAAACTCAGATGTgcgtctggacgggactaaaattactggaggaccacggagtttagagaaaaacagtagataatttaaCCTGTAAtcttctcagaggacgtctgagaaaaacacatatatgaggacccccataaaagataaaatgtccTCAGGagcccctgagaaactaatcccatctggaaAGGGCTTTAGAATTATTATTGTGAATGGGCTTATATGTGCAAATGAAATTTTTTCCCACATCACAAAAACAATAGATTGAACAATTTACCATGGCGTCAGTTTCCAGTTGAACATTTGACAGCAAGTTATAAAGcacactgtactgtataaaATGAGAACAATTCATAATACAGGTAAAAACTTTTTCAAGCCAAAGGTTTAAGACAAATTGAAACCATTTTAACATTCACTAAgcagaaagcaaaaaaacaaaaaaaaacaaaacaaaaaggttttaatacttaaaatagtaaaacagaccaattaaataaataacttgtacagtaaattgtgtgTGAAGTGCGTGTCAATGCTAATTTCAAAAACAGTCATAATCGTCCAGCCTATTGCTCTCAATCATTTACCACTACTGCAGGACATCACGAGCGTAAAGACACGGGCGTGAGCTTATTGAACCCGGGTCTCCAGCATGGCGGTGGACACCAGGTGAAGCGGGGATCCTACGCAGCCACTGACGTGCCGAAGAGAATCAGCCCCCAGGTAGGCCAGCAGCAGCTCGGAGCGACGGTGCAGCAGGTGGAGGATATCCTCAGCGAGGGTTTCTACACTGGAGTAGCGCACATTCTCCAGGTCAAATATGTCCTTCAGGAAGAACAGGACCTGGTCCTGCAGGATCaggacaaacacaaacaaagatTCTGGGTAAATATACacat

Function

symbol description
miga1 Predicted to enable protein heterodimerization activity and protein homodimerization activity. Predicted to be involved in mitochondrial fusion. Predicted to be integral component of plasma membrane. Orthologous to human MIGA1 (mitoguardin 1).

NR:

description
PREDICTED: mitoguardin-1 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU187634 True 3441 lncRNA 0.46 17 3540971 3552550
TU187635 False 2544 lncRNA 0.37 3 3541720 3568654
TU187639 False 1926 lncRNA 0.38 4 3550422 3552550

Neighbor

gene id symbol gene type direction distance location
usp33 usp33,LOC107708728,LOC107751869 coding downstream 5566 3504576 ~ 3535405 (-)
zzz3 zzz3,LOC107558175,LOC104950552 coding downstream 37149 3479968 ~ 3503822 (-)
pigk pigk,LOC107751867,LOC107599845 coding downstream 124662 3381575 ~ 3416309 (-)
dnajb4 dnajb4,LOC108430719,LOC107599850,LOC107751861,LOC107681825,LOC107690981,LOC107566472 coding downstream 356436 3177666 ~ 3184535 (-)
LOC107197653 NA coding downstream 390094 3119979 ~ 3150877 (-)
LOC103031087 dia1a,LOC108437525,LOC107681802,LOC107599840,LOC107722302,LOC107565821,LOC108268022 coding upstream 154083 3722737 ~ 3759982 (-)
LOC103031615 NA coding upstream 224674 3793328 ~ 3796794 (-)
LOC103032259 si:ch211-38m6.6,LOC108437504,LOC107656858,LOC107722537,LOC107565819,LOC107681768,LOC108267997,LOC107599859 coding upstream 406156 3974810 ~ 3990263 (-)
LOC103021848 LOC103021848,LOC108437503 coding upstream 434171 4002825 ~ 4016139 (-)
eif4a2 eif4a2,LOC108267852,LOC107568626,LOC107593804,LOC105889495 coding upstream 500124 4068778 ~ 4074278 (-)
G138563 cope,LOC107690966,LOC107709006 non-coding downstream 340861 3194593 ~ 3200110 (-)
G138515 txndc12,LOC107690994,LOC107566463,LOC107708672 non-coding downstream 384916 3150921 ~ 3156055 (-)
G138493 aldh9a1,LOC108267615,LOC108430735,LOC107681718,LOC107593789,LOC105891333 non-coding downstream 517599 3022115 ~ 3023372 (-)
G138446 NA non-coding downstream 685153 2768999 ~ 2855818 (-)
G138651 LOC103030773,LOC108437505,LOC108267627,LOC107558181 non-coding upstream 16530 3585184 ~ 3598597 (-)
G138657 NA non-coding upstream 30609 3599263 ~ 3599510 (-)
G138659 NA non-coding upstream 47139 3615793 ~ 3616014 (-)
G138662 NA non-coding upstream 95122 3663776 ~ 3664008 (-)
G138706 NA non-coding upstream 262013 3830667 ~ 3831292 (-)
gipc2 gipc2,dnajb4,LOC108430720 other downstream 365618 3156750 ~ 3175353 (-)
LOC103025790 NA other downstream 426285 3095601 ~ 3114686 (-)
LOC103045355 LOC108430731 other downstream 478212 3050400 ~ 3062759 (-)
LOC103042176 zgc:55943,c7h1orf21,LOC103042176,LOC108430752,LOC107709356,LOC107671715,LOC107559369,LOC107593773,LOC107727521 other downstream 1054077 2477695 ~ 2486894 (-)
G138199 plk3,LOC107563563,LOC107722069,LOC107658359,LOC107726922,LOC107557223 other downstream 2439478 1050532 ~ 1101493 (-)
G138708 NA other upstream 264067 3832721 ~ 3833670 (-)
LOC103047802 pcolce2a,LOC108437522,LOC108268019 other upstream 279068 3847722 ~ 3861356 (-)
LOC103034146 zgc:110366,LOC108267892,LOC108437513,LOC105007548 other upstream 762217 4330871 ~ 4338197 (-)
G139074 NA other upstream 1707452 5276106 ~ 5276468 (-)
G139105 NA other upstream 1761424 5330078 ~ 5330805 (-)

Expression


Co-expression Network