RNA id: TU187635


Basic Information

Item Value
RNA id TU187635
length 2544
lncRNA type inter_gene
GC content 0.37
exon number 3
gene id G138650
representative False

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 3540971 ~ 3568654 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGACAGGTCAACAACTCTCAACAGTCAAAAATCCAACAATAaccagcaaaaacaaacaaaaataataatgtacattCGAGAGTTTCAACAGTACAGGAAACCATTTGTGTTTACCTCTAAGGCATGCTCCCCATTTCTCAGATAGCCTCCGATTAAGTCTTCTTTTCTACACCCCCACGAATTCTGTTGTGAACAATTTGCTCAGAAGGAAAGAGCAGATTGCATGCATACCAAAACATATGCAGCAATGCACAGCAAAAATTCAAAAACTCTCCAATTTTACTGCCAAAAAGCAAAATCATGTCTGTAACAGTTGCTACGCAaaattatcaaacaaaaaaagttcctGGTCATGATCCAACTCTATAGCATTGGTGCACATTACAATCCCTAACTCAGATCATATTATCAAAAGGGCAAAGCATGTACGAAAATTTCATTTCAAATTCAGTTCAGACAGGCCATTTCATCAACCGACAATTCAAAAAGCATTGTTGTTACTGATCTTAAGACAATGCTAGCTTATCAGAATATAGCATCAACAAAGAATTGCCCTAAACGAATAACATTAAAATTTGCAAAAATCACAGATTCCTCAGGatacattttctttaccttATAACTGGAGCCCTCGAACGGTCTATGTTCAGCGGAGGGACAGACTCAGACTCCTCCTTAGGGACAAACCTAGCTCAGGACCTGATTCTACGACCTATGCCTGCAGCATCTTCAACACTGTGAGTGAGAATGAAGGCAGCAATTTGAATTAGAACTACAGAAGGGCAATAGCACAGCGTTTAAACCAGTGACATGTGAGCATACATACATGTGTACACTTCAGCATCAATGAATTAACAGCTAAGACAGATCCCTGGTTAAACAATATTCCAACTGCATGCAGCATTGGTAAGGCAGGGAAAATGTCTACAGTGATAATGAATGAGCCATCCTAACGTAAAACACCTAAAACTAACATCAGAATGAACAAGCATTGGACATATTGGCATCGAATGAACAAGAACGGCATTTCAAAtcagacaggaaaaaaaaaaaaaaagacagaacttCTACTTTGCATGTGTGGAGTTAAATTCACATTGAGCTACACGTCAGCCAGTGACATGCAAATCATTAATATCAGTATAGATCATCCTATAGCTACTTTTATAGGGCTGTGGCTTTCAGAGCTAATGTCAACATTTTATAAAGACATGAGCCTAGATATTCTAGATtgacatttttaacaaaaaaaggtaaaatagagTCAGGTAAAATACATCATCAAGACTTTTGAGTCACAGGTTCAAACACTTGGTTTCTTAGGTTAAGCTTACCTGTGTTATTGCAGCAGAACCTAAGGTCTGGGATGACGCTGCAAGATTAGACATTGCACCGCTCACTGCGCCACTAATCAACATAGTCAAATGAATCACTTGCATCAATTTGACAGCCTTCAATGACTTAAGAAGCAATGGCaaattgcaattaaaaaaaaccatTCATAGGCAAAAATCAGACAGCCTGAAAAGTGGTAGTCGCATGTCAGCCAACATCAACATCTCAACAATATACATTGATACGGTGAGAACTGCCTAAATTACCACTGAAATCACACAGAATGCAATGGAAGAAAACTTGGCAAAACATCATCATGTCTGAtggcacttaaaaataaagaactaaaCTGACATTTCCTAACTGACCTGACTGGAACATTTgcacttattttaaaaatgtaaatgtcatTCACAGTTCATTATTTGAAATAGGATTCTCCTACAGGGACTAAGACAGTGGAAATATTGCTAAGTGTCAATTCTATCAACACGAGAATATGAACAGTCCAAATCATGAACAGGGCAAGGTCACAGGCTCAAGAGAGACATCAATATTTTTCATATCAAACCAAACCGCAGCCTAGAGACATACTtacccaaaaacatttttaataataataaaaaaggcagTTTCAGGGTAAACATTGCATCGCATCTTATGCACTAAGCAAGTACTTTAATTGGTCAAAGACAATGCAttgacagaacaaaaaaaattgggCCATTTTGTACATGTTGGTACTTACAGCAGAGGGCTCTCATTTCACTGGTGGGGTACAGCACACAGCATACACTCCTCAGCCCTTAAAAAACGCACTTCTTACAGGCCTACACTGGAGGAATGCCAACACACAACGGGCAGAACAGGGCACCTTTGCATTTGATCTGTTTAATCGCTTTAAAGGTTAAGAAATGCCagcagatatatagatatatatacgtatatgcaCTTGaatttgctttagtttttttaaaaaaggtatgtatgtattttgggACATTACAAAATTATGGAAAGGGAGCACATGGAATTTTATAATACATAATTGTTAATTGAGCACACTTCACCTGCCCTGTAAAAAACAGCAtactgagaaagagagcaacTAAAAAGCTTGCAACACTTCTACAgtcacattatatattataaaggaacatttttgtttggttttacaaaaaaacaaaaaaaaaaaaaaaaaaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU187522 lncRNA downstream 341610 3197707 ~ 3200110 (-) False G138563
TU187521 lncRNA downstream 343236 3194593 ~ 3198484 (-) True G138563
TU187509 lncRNA downstream 380784 3156751 ~ 3160936 (-) False gipc2
TU187430 lncRNA downstream 385665 3150921 ~ 3156055 (-) True G138515
TU187408 lncRNA downstream 427118 3110297 ~ 3114602 (-) False LOC103025790
TU187640 lncRNA upstream 16530 3585184 ~ 3598597 (-) True G138651
TU187650 lncRNA upstream 30609 3599263 ~ 3599510 (-) True G138657
TU187652 lncRNA upstream 47139 3615793 ~ 3616014 (-) True G138659
TU187655 lncRNA upstream 95122 3663776 ~ 3664008 (-) True G138662
TU187728 lncRNA upstream 262013 3830667 ~ 3831292 (-) True G138706
XM_022677835.1 mRNA downstream 6315 3504576 ~ 3535405 (-) False usp33
XM_022677834.1 mRNA downstream 6316 3504576 ~ 3535404 (-) False usp33
XM_022677836.1 mRNA downstream 6759 3504576 ~ 3534961 (-) True usp33
XM_007250669.3 mRNA downstream 37898 3479968 ~ 3503822 (-) True zzz3
XM_007250667.2 mRNA downstream 125411 3381575 ~ 3416309 (-) True pigk
XM_022677841.1 mRNA upstream 154083 3722737 ~ 3759982 (-) True LOC103031087
XM_007250675.2 mRNA upstream 154083 3722737 ~ 3759981 (-) False LOC103031087
XM_007250677.3 mRNA upstream 224674 3793328 ~ 3796794 (-) True LOC103031615
XM_022677842.1 mRNA upstream 279068 3847722 ~ 3861356 (-) True LOC103047802
XM_022677695.1 mRNA upstream 406156 3974810 ~ 3990263 (-) True LOC103032259
XR_002651005.1 other downstream 478961 3050400 ~ 3062759 (-) True LOC103045355
TU187245 other downstream 1054969 2478781 ~ 2486751 (-) False LOC103042176
TU186973 other downstream 2440227 1050532 ~ 1101493 (-) True G138199
TU186914 other downstream 2834772 695903 ~ 706948 (-) False LOC111194217
TU187730 other upstream 264067 3832721 ~ 3833670 (-) True G138708
TU187750 other upstream 279346 3848000 ~ 3851682 (-) False LOC103047802
TU188022 other upstream 762996 4331650 ~ 4335889 (-) False LOC103034146
XR_002651007.1 other upstream 764479 4333133 ~ 4338197 (-) False LOC103034146
TU188021 other upstream 767337 4335991 ~ 4338094 (-) False LOC103034146

Expression Profile