RNA id: XM_007250667.2


Basic Information

Item Value
RNA id XM_007250667.2
length 2483
RNA type mRNA
GC content 0.46
exon number 11
gene id pigk
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 3381575 ~ 3416309 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTTGAAAGGGAGATTTCGATTTCCTAGAACAGAGGGCGAAGCTGCAGCTGCTCCCAGATGAAATTTCATCATGGCAAATTATTTCACATTTCTGTCAATATTTGCTTTTATTAATGTGCTCGTTTTTCTGCCAGTGATACACGGCAATAGCTTTGAGACTAAAGCCTCTCAGTTCTTCAGCAGCGGTCACACCAACAACTGGGCAGTGCTGGTTTGCACATCCAGGTTCTGGTTTAACTATCGACATGTTGCCAACGTGCTGTCTGTGTACAGGAGCGTGAAGAGGCTGGGCATTCCAGACAGTCACATCGTGCTGATGCTGGCTGATGACATGGCCTGCAACCACAGAAACCCCAAGCCGGCCACAGTGTTCAGCCACAAGAACATGGAGCTGAATGTTTACGGAGACGATGTGGAGGTGGATTACCGCGGCTATGAGGTGACTGTAGAGAACTTTTTGCGAGTCCTGACTGGACGGCTCCCGCAGAGCACCCCTCGCTCCAAACGGCTACTGTCTGACGACCGCAGCAACATCCTCATCTACCTGACAGGTCACGGCGGCAACGGCTTTCTGAAATTCCAGGACTCGGAGGAGATCAGCAACGTGGAGCTCGCTGATGCGTTTGAGCAGATGTGGCAGAAGAGAAGgtACAACGAGTTGCTGTTCATCATTGACACCTGCCAGGGAGCTTCCATGTACGAGCGCTTCTACTCGCCCAACATCATGGCTCTGGCTAGTAGCCAGGTGGGCGAGGACTCTCTTTCGCATCAGCCAGACCTTGCCATCGGGGTTCATCTGATGGACAGATATACCTTCTATCTGCTGGAGTTCCTGGAGGACATTCATCCTGCTAGCCAGGCCAACATGAACGATCTGTTCAAGGTGTGCCCGAAAAGCCAGTGTGTCTCCACTCCTGGCCACCGCACTGACCTGTTCCTGCGGGACCCTGGAAGCGTCCTCATCACCGATTTCTTTGGAAGCGTCCGTAAAGTGGAGATAACCAGAGAAGCCATCAACTTAACCACTACTGCTGAACAGCCTGTGGAAGTAACGTCTGTCAGAAGGGAAGTGAAGAGTGAAGCCCTGTCTTATGTGGACCAATTACCTGTGGCTGAAATCATTCATCAGAAACCCAAGCAGAAGGACTGGCACCCTCCGGACGGCTTTATCCTGGGCCTGTGGACCCTCATCCTGCTGGTGTTCTTCAAAACCTACGGCATCAAACACCTCAAACACATCTTCTGAGGGGCTCAGCAGCCGGACCACCTTCCTGGAATGCTcgagcagctctctctctctctgcttggtgctcataaattattatttctatttgcCTGCCTGGTGAAAGTTTCATCGTCAGCGCTCGTTCTTTTCAGAAAGTGACCTAGACTGAAGGCCGGCGCTGAAAAGCGGCACCACTGACTGCTGGCTTTCAGAGCTGCTTTGTTGACCCTGTGCTCACAGGCTGTGATCTgggcattttctttttcttatttcttttttctcctccggTTATTCTACTCTTTTTATATACAGCAGCCAAGGACGAATCCCAATCGCTACGATTAGACTCAAAACTGCAAAACTCTCCTGTTGTCTCTCACAGCACTTTTCGTGGATGTGAAACCAGCATCGCTCTGGTTcaaaacctaattttgaactgtTCGCTGTGTTTCCACCCacaaaagtaggttctggaACAAGAAATGTTCAGTTGAATCGGGAACTCGAGCCTCgagcggttctgatacatcggctcacagatgcagacttgtgctgatccacatcaccctagaagcaatgagggggaaagagcgccatctacccacacagagagagcaagaccaattgtgctctctcagggctccagcagatggtggcaagctgcatgactgggatttgaaccagcaatctctccCAATCATTGGGTGTGCCCCACTGTACCATCTCCCTTTTATCCCTCAGTCCTCAGTTCTAACCAAATCTATTCTTTATCTTTTGTAAATATGGTTCATTCTACTTTAAATCATTTACTCTTATGATTTTTGAATGAATTTTGTATTCAAAGCTACTGAGTTTAACTCTAATGCACTGAATTAAGGTTTATAAGTGTGTTTATTAGGTTTGCTTGaatgtacattttactgtatgCTTGAAGGAATGCGTATGCATCAgtaacacagcaaaaaaaaaaaataaaaaagaccaattgtgctctctcagggctctggcagctgatggcaagctgcaaatagttttttttttttttgtataatgtaacattataataacaatGCATTATTTGTCCACAGTAGATGCACACCTTCAGCTTGTCTTCAGCTAAATAtctaataatacaatttaaataaaacttaaagtaTCCATTCAAAAAATTCTCATTCACTGAAAATTAATTGGCGTTTTTTGTCCACATATTGCCTTTGTAATGGTTCATGTTCCAACAAcagaataaatgaattaa

Function

GO:

id name namespace
GO:0050976 detection of mechanical stimulus involved in sensory perception of touch biological_process
GO:0016255 attachment of GPI anchor to protein biological_process
GO:0006508 proteolysis biological_process
GO:0034394 protein localization to cell surface biological_process
GO:0042765 GPI-anchor transamidase complex cellular_component
GO:0004197 cysteine-type endopeptidase activity molecular_function
GO:0003923 GPI-anchor transamidase activity molecular_function

KEGG:

id description
K05290 PIGK; GPI-anchor transamidase subunit K

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU187522 lncRNA downstream 181465 3197707 ~ 3200110 (-) False G138563
TU187521 lncRNA downstream 183091 3194593 ~ 3198484 (-) True G138563
TU187509 lncRNA downstream 220639 3156751 ~ 3160936 (-) False gipc2
TU187430 lncRNA downstream 225520 3150921 ~ 3156055 (-) True G138515
TU187409 lncRNA downstream 266973 3095601 ~ 3114602 (-) False LOC103025790
TU187634 lncRNA upstream 124662 3540971 ~ 3552550 (-) True G138650
TU187635 lncRNA upstream 125411 3541720 ~ 3568654 (-) False G138650
TU187639 lncRNA upstream 134113 3550422 ~ 3552550 (-) False G138650
TU187640 lncRNA upstream 168875 3585184 ~ 3598597 (-) True G138651
TU187650 lncRNA upstream 182954 3599263 ~ 3599510 (-) True G138657
XM_007250664.3 mRNA downstream 197040 3177666 ~ 3184535 (-) True dnajb4
XM_007250663.3 mRNA downstream 206222 3156750 ~ 3175353 (-) True gipc2
XM_022677829.1 mRNA downstream 255316 3119979 ~ 3126259 (-) False LOC107197653
XM_007250669.3 mRNA upstream 63659 3479968 ~ 3503822 (-) True zzz3
XM_022677835.1 mRNA upstream 88267 3504576 ~ 3535405 (-) False usp33
XM_022677834.1 mRNA upstream 88267 3504576 ~ 3535404 (-) False usp33
XM_022677836.1 mRNA upstream 88267 3504576 ~ 3534961 (-) True usp33
XM_022677841.1 mRNA upstream 306428 3722737 ~ 3759982 (-) True LOC103031087
XR_002651005.1 other downstream 318816 3050400 ~ 3062759 (-) True LOC103045355
TU187245 other downstream 894824 2478781 ~ 2486751 (-) False LOC103042176
TU186973 other downstream 2280082 1050532 ~ 1101493 (-) True G138199
TU186914 other downstream 2674627 695903 ~ 706948 (-) False LOC111194217
TU187730 other upstream 416412 3832721 ~ 3833670 (-) True G138708
TU187750 other upstream 431691 3848000 ~ 3851682 (-) False LOC103047802
TU188022 other upstream 915341 4331650 ~ 4335889 (-) False LOC103034146
XR_002651007.1 other upstream 916824 4333133 ~ 4338197 (-) False LOC103034146
TU188021 other upstream 919682 4335991 ~ 4338094 (-) False LOC103034146

Expression Profile