RNA id: XM_022677836.1


Basic Information

Item Value
RNA id XM_022677836.1
length 5367
RNA type mRNA
GC content 0.47
exon number 25
gene id usp33
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 3504576 ~ 3535405 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CCAGCTGTCAAATGCCCTTATGGCCTACAGTCAGCTTTCACTTCGGGCGTGCTCCAAACTGCTGTACGCCCCCTTCGTAGTGCTCTACTGTAACGGTCGTGTGGAAGAAACttccatttacacttttaaacataaaaataggttagttagctaaccttgctATCTGCATATTGTGTGATACAACATTTAAGACACTCTTTTTGTGCAATCCCACTGACGTTTCGGATTGGTTATTTGGACGACTCCAGCATGTGGTTCTCCATCTTCAGCCCTGCAGAGCTTCAGCATTGCAGTGTGTGATGATGTCCTACATGCAGCAGATTAGTAAAGGCAGAAGGCAGATAAACCAGTCCCTGGACAGCAGTGTCCTGTTGCAGCAGAGAGGAGATGTGACTATATAAAGATGTTGGCAGAGGATGAAACGCCAACAGTTCCGTTgcagTTAAACTAATATAAAAGTGATGCCACCCGGCACAAGCTGCGACTGTCCGCACCTGGAGTGCGTCGGCGAGATCACTAAAGAGGAACTCATCCAGAAATCTCATGGCCAGTGCCAGGACTGCAAAGTCGGGGGACCAAACCTCTGGGCCTGTCTGGAAaATGGCTGTTCATATGTTGGCTGTGGAGAATCTCATGCTGACCACAGCACCGTCCACTCTCAGGAGACGCGGCACAACCTGACTGTAAATCTGACTACGCTGAGGGTGTGGTGCTATGCCTGCGCCAAAGAGGTCTTCCTGGACAGGAAGCTTGGGCCTCCCAACCTGCTGCCCAGTGCTGTCAAACCCATCTCCCCTCTGCAGACCCCCAGCCAGGAACCTGCAGCTCCAGGCAGCCCAACATCTCTGAGGGTTCCCCCAGCTGGAGCCTGCGAGGACCTGGATATGGAGACTGAGGAGGAGGATGACTTGAGGACCAGAGGTCTGACTGGGCTAAAAAACATTGGCAACACCTGCTACATGAATGCTGCCCTACAGGCCCTCTCCAACTGtcctcCCCTGACGCAGTTCTTCCTGGAGTGTAATGGTCTGGTCCGGACGGATAAGAAGCCGGCTCTGTGTAAAAGCTATCAGAAACTGATCACAGACCTGTGGCACAAAAACAGgCCTTCCTTTGTCGTCCCCACAAATCTGTTCCAGGGCATCAAAGCTGTCAATCCCATGTTTCGCGGATACTCCCAGCAGGACTCTCAGGAGTTCCTCCGATGTCTGATGGATCAGCTGCATGAGGAGCTGAAGGAGCCAGTAGTGGAGCCCGAGGACCAAAGTCCAACAGTGAGCGTGGACGACAGCCCGGACGAAGACGAACGCAGTCGCTCAGAAAGCGATTTCCAGTCCTGCGAGTCTTGCAGCGCCGACAGCGAGGGTCCCCGAGCTCCAGAGGAACTGGATGAGGCAGAGATGTTGATTCCGGACGAGGAGAAGGCTAACAGAGAGTGGCAGAAAGAAAAGAACCTCATTAACAATCTGTACCGTGCTGGATCCCACGGTGACCTGGACAAGGACGTTGACACAACTAATGAAAGCAGGACCATAATTAGCAGCCAGGGGGCCATCAAGCAAGGCAAGACTGCAGATTCCAACCCTGAGATCCAGGTCAGCAACAATGCCCGTCCCCAGAGCCCGAGTGCCAACGAGGTAATCGCTCTCAAACTGTCCAGCAGTCCCCCAAAATCCACCCCCATGTGGCCTAGCTTGAGCTCAGCTCACAAGAAAGtgACCTCGTTTGCACCTCCAAAGAGCAAGCGCCAGAGGAAGCATCGCAGCGTCATCTCTGACGTGTTTGACGGCACCATCGTCAGTTCCGTGCAGTGCCTGACCTGCGACAGGGTGTCTGTGACCCTGGAGAACTTTCAGGACATCTCACTGCCCATCCCAGGGAAAGAGGACCTGGCCAAGCTGCACTCCGCTTCCCATCAGACTGCCCTGGTGAAGGCGGGGTCCTGTGGCGAGGCCTACGCCCCTCAGGGCTGGATTGCCTTCGTCATGGAGTACATTAAGAGCTGGTTCTGGGGTCCTGTGGTcacccttcaggactgtttggCTGCCTTCTTTGCACGAGACGAGCTGAAGGGGGATAACATGTACAGCTGTGAAAAGTGCAAGAAattACGAAACGGAGTGAAGTTCTGCAAAGTCCAGAGTTTGCCAGAGATCTTGTGCATTCACCTGAAGCGCTTCCGACACGAGCTGATGTTCTCCACTAAGATCAGCACTCACGTCTCCTTCCCACTGGACGGTCTGGACCTGCAGCCTTTCCTGGCCAAGGACAGCTCGGCCCAGATCACCACCTACGACCTGTTGTCCGTCATCTGCCACCATGGCACGGCCAGCAGCGGCCACTACATTGCCTACTGCCGGAATGATCTGAACCAGCTGTGGTATGAATTTGATGACCAGAGCGTGACTGAGGTCTCGGAGTCCTGCGTTCAGAACGCTGAAGCCTACGTGCTCTTCTACAAGAAGAGCAACGAGGATGCTCAGAAGGAGAGGCGGAAGGTGACGGCGCTGCTCAACATGATGGAGCCCAGCCTGTTGCAGTTCTACATCTCGCGCCAGTGGCTCAACAAGTTCAGGACTTTCGCAGAGCCTGGTCCCATCTCCAACCACGACTTCCTGTGTGCTCATGGAGGTGTACCACCACATAAGGCTGCATACATCGATGATCTTGTTTTAATGCTCCCGCAAAACGTCTGGGACCACCTGTACAGCAAGTATGGAGGAGGCCCTGCTGTTAACCACTTGTACGTCTGCCACACCTGTCAGACGGAGATCGAGAAGCTGGAGAAGCGGCGGAAGAACGAGCTGGACATGTTCGTCCGGCTGAATAAGGCCTTCCAGGAGGAGGAGTCTCCGGTGGTTATTTACTGCATCAGCATGCACTGGTTCAGAGAATGGGAGGCTTTTGTCAAAGGCAAAGACAATGATCCGCCAGGACCAATTGACAACTCTAAGATCGCTGTGAATAAGAACGGGCACATCACCCTCAAGCAAGGTGCAGATTCAGGCCAGATATCTGAGGAGACCTGGAACTTCCTCCACTCCATCCACGGAGGCGGACCAGTGGTGACCGTGCGGCCCAGCGTCAGCCACCAGGAGGTGGACAGCTCCCAGGCCGAGGAGAAGATCGAAATGGAGACACGCAGTGTGTAGCAGCTTCAACCTGCTGCCCTTTTAACAGGGGACTGGAAAACAATCTGTTATTTTGCACTTGACTCTTTCTTTTCGTCTCTAAAGCATTTGAGCAAAAGATCTGACCATGCCTTGTCTCCTCCCTCCTTCACACACACCcctccttcacacacacacctccaccacaGTCTCCATTCCATATGTGAACCATTCCCTGCTGCAGAGAAGTGGAATATGTCTCAGAATAGGCTTCATATTTGTATATACAGCACTGTCTGTCCACATTCTATTGGCACTGGTGACTAGGTTAGGCTTTAGAGGAATGGATTGGTGAAAAATCACATTTGCACATGTTCACACTTACCTTAGGTAAGGTAGTTGATCGACCAAGGCAGCTGAGGTTCACAGactttgcttctttagtttagcGCTGGAGTTATGAGGCTAACGAACACTGGAAGTCACTAGTCATCCAAATCATCATTACtgattgcttttgttttttaatattgtatccATATGTTGGTGAATTGCTTATTGTTGGCACTGATGCAGTGTGCTCAAGCTTAAtccttataaaataaaattaaattaaattaaattaaataaaatggttAGAGCTAGAGCTTGAAAGCTATTGTTGATACAAACAGTGAATGTTAATAGTTATCCAATTAGTTATTACTGCAGATACAGCCTGCACATGTCTGAACTCACTTAAACCATATTAATGTCATCCTTAAAATGGCACAGGCTTGTTAATGTGGTTCAGGATACAGTATGACATACTGTAAAtgataaacatattaataactAGCACGTAGCTAAAGCTAGGAGAAATTCTACATGCCCCACAACCTCACACAATCCCACAGATTATGTTTGCTATTTGTATTACTATTTATATACatgtaaagtattttaaaaagtttaaaatggaaTTCAAAAGTAAtggttcttttaaaaaaaggaacaacAGAAATCACAAACGTTCAGTTTCACAGTGAGGTTTTGTTCATATTTATAGTTCACTTTTTGTCTTATTTCACCCTAAACAACAACACAGACATGTCTACTCAGCAGTTTGCAGTTTGAGTGATTTTTGGATGACTTGGCTTTTAGTGTAAGCTAAAGAAGCAAAACTGCTAAATGTCTTGGTTGATCCACATCAACCATCATTCCACAGAgtggaaaatgtaaaattttacaCCAAACCGTTTCTTTAAAGGAGCGACAAGTGAAACTTTCCTCAGACACGtatagaaaatgtgtgtaagCTAGAATATCGCTGGAAATATGCATTCCTTTCCTACTTTTTCAATGAAAAGCACTAATCTTTCctctgtacaaaaaaaagaccCACAGGTTCAGCCAGTAGGCTAGCGAAAATATCGCTTATCGCTCCTTTGAGGTAGATCCTTGAAAAGGCGCCTTTTGGGAGCAAAACAAATGTACCGTTTTTTGTGACCAAATAGAGAATAATCTGTGAGTTGCTTAGCTGAACTTGGTGAAGAATTAAAATGCGTAGTACTGTACTCGTTGTCCGgttttaaaaggaaaatgtCCGTCCTAGGGAGCGGACGTTTCGCTGCTCCGCCTGAGATTGTGAAGGGATCCGAAGCGCTAAATAGTCTCAGGAAAggactgtgtatttttttttttttttctgttttgcactGTTTCCGTAGGCCTCCAGCTCTGCATGCTCCAATACTGATGTCCGATTTCTATCTGAATGTACTCGTACTTAATGAACACAGAGTTTCTTGCATTCTATGTTATTTATTCCAGAAGGGGTAACGTGATTTACTATAatgtttatactttttttttttctttttctttttttttttctttttttattcagcgAGCCAAACCTGATATGAAATGCATGCTGGAACGAAAGATATGATCTGTAGGCTGAAACTCCACTCGACTTGCATGTAGATGCAGAGCTGCTCTAGAAGAACAAGGCACACATTTAATtgtatgttaattaaaataaagaaaaatagacATGAATCTACTACAACTGATTAAAGATTGAGGCattaatttatgtatataatggcatgatttattttttctttttattatttttttgatgcTCATTGACTGGAATAGAGGACTGACATATCTGTCATTTATGAAAGCTGTATGGGAAGAATGAGTCCTACGTCTGTCACTTTTTGTTTTGGTTGGCCGAAACAAATTAAACCCAAAATTATTCAGTGAA

Function

GO:

id name namespace
GO:0006897 endocytosis biological_process
GO:0070536 protein K63-linked deubiquitination biological_process
GO:0016477 cell migration biological_process
GO:0071108 protein K48-linked deubiquitination biological_process
GO:0008277 regulation of G protein-coupled receptor signaling pathway biological_process
GO:0051298 centrosome duplication biological_process
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0007411 axon guidance biological_process
GO:0048471 perinuclear region of cytoplasm cellular_component
GO:0005813 centrosome cellular_component
GO:0004197 cysteine-type endopeptidase activity molecular_function
GO:0004221 obsolete ubiquitin thiolesterase activity molecular_function
GO:0004843 thiol-dependent ubiquitin-specific protease activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K11848 USP20_33; ubiquitin carboxyl-terminal hydrolase 20/33

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU187522 lncRNA downstream 304466 3197707 ~ 3200110 (-) False G138563
TU187521 lncRNA downstream 306092 3194593 ~ 3198484 (-) True G138563
TU187509 lncRNA downstream 343640 3156751 ~ 3160936 (-) False gipc2
TU187430 lncRNA downstream 348521 3150921 ~ 3156055 (-) True G138515
TU187408 lncRNA downstream 389974 3110297 ~ 3114602 (-) False LOC103025790
TU187634 lncRNA upstream 6010 3540971 ~ 3552550 (-) True G138650
TU187635 lncRNA upstream 6759 3541720 ~ 3568654 (-) False G138650
TU187639 lncRNA upstream 15461 3550422 ~ 3552550 (-) False G138650
TU187640 lncRNA upstream 50223 3585184 ~ 3598597 (-) True G138651
TU187650 lncRNA upstream 64302 3599263 ~ 3599510 (-) True G138657
XM_007250669.3 mRNA downstream 754 3479968 ~ 3503822 (-) True zzz3
XM_007250667.2 mRNA downstream 88267 3381575 ~ 3416309 (-) True pigk
XM_007250664.3 mRNA downstream 320041 3177666 ~ 3184535 (-) True dnajb4
XM_007250663.3 mRNA downstream 329223 3156750 ~ 3175353 (-) True gipc2
XM_022677825.1 mRNA downstream 378321 3119979 ~ 3126255 (-) False LOC107197653
XM_022677841.1 mRNA upstream 187776 3722737 ~ 3759982 (-) True LOC103031087
XM_007250675.2 mRNA upstream 187776 3722737 ~ 3759981 (-) False LOC103031087
XM_007250677.3 mRNA upstream 258367 3793328 ~ 3796794 (-) True LOC103031615
XM_022677842.1 mRNA upstream 312761 3847722 ~ 3861356 (-) True LOC103047802
XM_022677695.1 mRNA upstream 439849 3974810 ~ 3990263 (-) True LOC103032259
XR_002651005.1 other downstream 441817 3050400 ~ 3062759 (-) True LOC103045355
TU187245 other downstream 1017825 2478781 ~ 2486751 (-) False LOC103042176
TU186973 other downstream 2403083 1050532 ~ 1101493 (-) True G138199
TU186914 other downstream 2797628 695903 ~ 706948 (-) False LOC111194217
TU187730 other upstream 297760 3832721 ~ 3833670 (-) True G138708
TU187750 other upstream 313039 3848000 ~ 3851682 (-) False LOC103047802
TU188022 other upstream 796689 4331650 ~ 4335889 (-) False LOC103034146
XR_002651007.1 other upstream 798172 4333133 ~ 4338197 (-) False LOC103034146
TU188021 other upstream 801030 4335991 ~ 4338094 (-) False LOC103034146

Expression Profile