G138913


Basic Information

Item Value
gene id G138913
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 4396090 ~ 4396932 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU188049
cttataaaggtagtcttattttaaagtggtaccagtaaATTAGTAGGTCTGCATTAGATCGAGATCTACATAACAGGTAGTCCTGAGAGAGACCTCCCCCATGTCTGTTTGTGtctgggttcttttttttttttcttttttttttcttcttcttgacCATTCTGTctagaatctctctctctctttttttataattttttcttcttttcttgaaCTAAAATGTAAGTGAACGTTGTTGGCGTGTACGATTTGTACAGTTTCTATCACATTCCTAAGTAGTAGCATTCCAAGTGAGTCGATTTTTGTCCACTTctgctcttttcttttcttttctttcctttatttttctttataaatgtcTTCCAGAGACAAAACCTAGTCCTCAAAGGCCACCTAAGGGTTTTCAAAAGACAAGGGATGAGTACTTTTTACGTTTCTATCCTGTGGTGGATGGTGGTGTCTTGTCGAAATTTAAGAACCGACACAAAGGCTTTACCCTTCTTCAGCTCGAAGCCCTTAAACACCAAACACGGACCTCTGTGAGCCTCCGGCACCTACAGAACCGAGGACTCTGGACGCGGTGTCCCTCAGGGGTGTGCCCTGGGTCCAGTTCAATTCTGCCGAATTTCAGAATTCCACCTTTTCCAGTGGACTGTTACGTTACGTTATGTTTCGGGCTCGGACAGGAACGAGAGAAGCTCCCACTCCTGGTCGTAGTTAGTCGTTATAACCATTGTGGTGCATAGGAGCTGGGCTGCTTTCGCCCCTTTGGGAACATAGATTCACTTCAGTGCATCTGCAATAATCAGAAGGCTCCTCTTCAGATACCATGTCATGTACTAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU188049 True 843 lncRNA 0.42 1 4396090 4396932

Neighbor

gene id symbol gene type direction distance location
LOC103036275 cdc14aa,LOC108411489 coding downstream 14667 4362073 ~ 4381423 (-)
LOC111194273 NA coding downstream 35793 4349790 ~ 4360297 (-)
LOC103025293 NA coding downstream 92004 4290412 ~ 4304086 (-)
LOC103024967 LOC108437498 coding downstream 106542 4281527 ~ 4289548 (-)
LOC103024655 NA coding downstream 126188 4236669 ~ 4269902 (-)
xpr1 xpr1,LOC108267842,LOC107593799,LOC107681714,LOC107722139,LOC105029208 coding upstream 576 4397508 ~ 4432770 (-)
LOC103025914 NA coding upstream 38881 4435813 ~ 4453369 (-)
LOC103026217 nos1apb,LOC108428842 coding upstream 62837 4459769 ~ 4475917 (-)
LOC103036885 LOC103036885,LOC108428857 coding upstream 87301 4484233 ~ 4485985 (-)
LOC103037397 LOC108428887,LOC107681713,LOC107722123,LOC107560776 coding upstream 133604 4530536 ~ 4545488 (-)
G138910 NA non-coding downstream 44964 4332394 ~ 4351126 (-)
G138837 NA non-coding downstream 161908 4179824 ~ 4234182 (-)
G138822 NA non-coding downstream 220494 4172979 ~ 4175596 (-)
G138834 NA non-coding downstream 233610 4162212 ~ 4162480 (-)
G138830 NA non-coding downstream 244955 4141468 ~ 4151135 (-)
G138919 NA non-coding upstream 23932 4420864 ~ 4421595 (-)
G139011 NA non-coding upstream 309281 4706213 ~ 4707525 (-)
LOC111194275 NA non-coding upstream 355641 4752573 ~ 4754327 (-)
G139027 LOC107602621,LOC108268010,LOC107749088,LOC105907002,LOC106574506,LOC107678690,LOC102777581 non-coding upstream 424271 4821203 ~ 4838073 (-)
G139029 NA non-coding upstream 438850 4835782 ~ 4836531 (-)
LOC103034146 zgc:110366,LOC108267892,LOC108437513,LOC105007548 other downstream 57893 4330871 ~ 4338197 (-)
LOC103047802 pcolce2a,LOC108437522,LOC108268019 other downstream 534734 3847722 ~ 3861356 (-)
G138708 NA other downstream 562420 3832721 ~ 3833670 (-)
gipc2 gipc2,dnajb4,LOC108430720 other downstream 1220737 3156750 ~ 3175353 (-)
LOC103025790 NA other downstream 1281404 3095601 ~ 3114686 (-)
G139074 NA other upstream 879174 5276106 ~ 5276468 (-)
G139105 NA other upstream 933146 5330078 ~ 5330805 (-)
G139489 NA other upstream 1612121 6009053 ~ 6010867 (-)
LOC111194281 NA other upstream 1625677 6022609 ~ 6054733 (-)
G139487 NA other upstream 1908037 6304969 ~ 6374709 (-)

Expression


Co-expression Network