G139043


Basic Information

Item Value
gene id G139043
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 5005492 ~ 5006291 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU188222
CTACAACGAAGGGACACAAGCAAAAATAAGTGACGACTCcatgaaaaacagaaacaaaaaaacataaaaaacaaaaccaaaacatttattattgatgcagttttcccattttttaataaacaacatCTTTCAGTCTAAAGAAaacaatttacaatataaagaaACATACAAAGGACTTCTGTTAAACTACACGAGACACGGAGAAGTCCCTAAAGACGAGGATCCGAACTAGCCTAACATGAAATACAAAGCAAAAACCGAGGAGGCCACTGCTTCATACTcaatactgctgctgctgctgcttttcttgttgttttgtttctcaTAAAGAACGACAAAAGAAATGGCGCAGGAGGAAAACCACCGTCCCCATCATTATTGTGTGTGACCTCATCTACCCTGCTGGCAAACAATAGAACCATCATGATCATCATGATCATGATCGTCATCATAAAGATCATCATGATGATCATCACGAAGCACGACGGTGGGAACGATGGCCGGTGAGTTTTACACGGAGAACAAGAGCAAGGACAACGGCGACCTTAGAAAAAACACTTCTTCCAAACTTCTGCCAAACGCCTCCTCCCTAGTTCAGTTCTACTTTTTTACAAGTACgctttttcttaattttattcttttttttttacatttttactttaaatacatttaaaaaaaaagagaaatcctTCATAGCAAAGTCTGTTTGTGGTCCCTTAATGTTTTGGTGAAACGCTGTTCGCTGCTTTTATTGGTTTCGTTGGTTTTGTTTCAACATGATTTCCATGgaggcgaaaaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU188222 True 800 lncRNA 0.37 1 5005492 5006291

Neighbor

gene id symbol gene type direction distance location
LOC103027391 crlf1a,crlf1,LOC108428895,LOC107602622,LOC107678692,LOC107588877,LOC107690059 coding downstream 199825 4771793 ~ 4805667 (-)
LOC103039917 LOC103039917,LOC108428861,LOC107602632,LOC107749223,LOC108267126,LOC107721708,LOC107588920 coding downstream 238199 4761753 ~ 4767293 (-)
LOC103039099 wdr48,LOC103039099,LOC108428893,LOC108268031 coding downstream 256739 4738988 ~ 4748753 (-)
LOC103038044 coa1,LOC103038044,LOC108428892,LOC108267121,LOC107600219 coding downstream 277964 4723386 ~ 4727528 (-)
LOC103037397 LOC108428887,LOC107681713,LOC107722123,LOC107560776 coding downstream 460004 4530536 ~ 4545488 (-)
LOC103027706 acvr1l,LOC108428902,LOC108267867,LOC107678695,LOC107602619,LOC107749086,LOC107721710 coding upstream 25128 5031419 ~ 5045009 (-)
ccdc24 NA coding upstream 560893 5567184 ~ 5598775 (-)
b4galt2 b4galt2,LOC107700994,LOC107557142,LOC107599894,LOC107657457 coding upstream 618568 5624859 ~ 5898800 (-)
LOC103034342 NA coding upstream 970976 5977267 ~ 5997977 (-)
LOC111194226 NA coding upstream 1014807 6021098 ~ 6022596 (-)
G139003 NA non-coding downstream 150800 4838866 ~ 4854692 (-)
G139027 LOC107602621,LOC108268010,LOC107749088,LOC105907002,LOC106574506,LOC107678690,LOC102777581 non-coding downstream 167419 4821203 ~ 4838073 (-)
G139029 NA non-coding downstream 168961 4835782 ~ 4836531 (-)
LOC111194275 NA non-coding downstream 251165 4752573 ~ 4754327 (-)
G139011 NA non-coding downstream 297967 4706213 ~ 4707525 (-)
G139040 NA non-coding upstream 21629 5027920 ~ 5028705 (-)
G139052 NA non-coding upstream 25837 5032128 ~ 5034193 (-)
G139073 NA non-coding upstream 202896 5209187 ~ 5276039 (-)
G139098 NA non-coding upstream 312283 5318574 ~ 5318816 (-)
G139108 NA non-coding upstream 336190 5342481 ~ 5342814 (-)
LOC103034146 zgc:110366,LOC108267892,LOC108437513,LOC105007548 other downstream 667295 4330871 ~ 4338197 (-)
LOC103047802 pcolce2a,LOC108437522,LOC108268019 other downstream 1144136 3847722 ~ 3861356 (-)
G138708 NA other downstream 1171822 3832721 ~ 3833670 (-)
gipc2 gipc2,dnajb4,LOC108430720 other downstream 1830139 3156750 ~ 3175353 (-)
LOC103025790 NA other downstream 1890806 3095601 ~ 3114686 (-)
G139074 NA other upstream 269815 5276106 ~ 5276468 (-)
G139105 NA other upstream 323787 5330078 ~ 5330805 (-)
G139489 NA other upstream 1002762 6009053 ~ 6010867 (-)
LOC111194281 NA other upstream 1016318 6022609 ~ 6054733 (-)
G139487 NA other upstream 1298678 6304969 ~ 6374709 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) G154909 NA non-coding CM030142.1 CM030142.1 11613674 ~ 11614383 (-)