G40998


Basic Information

Item Value
gene id G40998
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 1028708 ~ 1031192 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU46541
CATTTCTTCAGTGTTGTCACATGAAAAGATATAATAAAATATTTACAAAAATGTGAGGGGTGTACTCACTTCTATGAGATACTGTATATTATCCTGTATATTACATAAACAAATGGGCAGATGTCCCTGCATGATAGGCCAGTCCTTGGCAAAAAAAAAAAAAAAAAAACGAGAGAAAACACTTGTATTGGCCCACTGGGAAAATGACCGGTATGATTAGTAATCCAGACCTGCAAGGGGGCATTACTGATGCATTTTGTGTCGTAGAATAAAACATGAAAATATCTTGAGCTTGTGTTAACCACAGAGTTTATTTTAGGCATTTAACCAAAAATCCATTCAAAAACCCCACTGACTTTGGGAAAATTGAACCAGAAGTGCAAAAATGCTAACTTATTTCCAGGTTTTAGGACTCATTCCTGCGTCACCTTTCAGTACCATAGCTAATGATGGACCGGCAGCAACCAGTACAGGTCAAATCTGCATTATCAGATTTCTCTTTTGCAGATCATGTCTTGTTGGAAATGACTGCTGCAAACCTATTGGAATGTGTGAAAGAATTCTGGCACACACCTTTTAAATTCTGCCCTCTGGTTTCTCCGCTCTGACCCCTGCTGCACAGTGGCTGGGCAGTTCCAATTATCACTAAGAGCTTTTCACTCCTCTTGTGTCAATATGCACGATACACGTTTTTGTGCTGAGCAAAGGCTCTTCTGAAAATGAAACTTGTCAGACACACAAGTTACACACTAGGACTCCTTCGCATGCACGCACACAATTCATCTCATGACAGGTTCATCTTTTTACTGAAATTGAAATGGAAGGCAGTATAGGAAACTTAAATTGTGAGAGTGGCACAGCCCTCGTTTTTAATCTACATAGAAGCTTTTGCTTTGCTTAAATAATCACTGATAAGATACGAATGTAAATCTGTCAATCACTTCATCTGACACTGCCAAAAAAAGAGATCAAAATGCAACCTGAAACTGTGCTAAATCTGTTCTCACCAAGTTATTATAACAATTTATCTATTTATGTTTTGTATGTAATGTACAAATCATAGATTCCTTTATCCAGTTTATACTATTTCATTAGAAAACAAAACTGCTGTACAGTCTTAAGAATGAAATGACACCTGACAGGTTATTAATTGACTTGTTAATGCTCTCAGAAGAGAACATTTAAATTGTACATTTAAATATTTGAGTATTTATGTATTTTTTGATGATTTAGAGAAAAAATAGAAAGAGATTCAATTTAAAGTTAAATTTATTCTATGAATTATACAGGTATATGAATTATACATATTTAAATGCCAAGATTTTAATTGAGGAAATGTCACAATATCAACACTATGAATTTGATTTGAATGATTTCACTTAGCCTATAAACATTAATTTGTGTCCACAAAAATCTTTGATATTATTCAACATAATTCACAGTTACAGATCAATATTTTCCAGAGACAAAATTAGATCAACCTCAAAACATTTCCTATGCAATAAATCCTACAAATGTTGATATTCAGATGAAATTACTAAATTCAGAAAAGCATAGTCATTGAATGTGTTGAGATGAGATTTTGTGGCTTGATCATGAGAAAAAGATTAAGGCACCTTACCCTGCCACACAATCATTATACAGAGACGATTCATCTGGAGCAACTTGGGGTTAAAAGTCAGGCGGTTAAGTATTAAGGGTTAAAACCTGCATAATGCGGCGAAATACTGCAGCAAAATGTCAGCTAGATATTTGAGGAGAAAGTGTCTTTTTTATAGACCTTTTTCATTTTTCAGTCAAGGTGAATGTGAACAGAGAAGGTGAAACTTAACGATTAAATTATTCCCTAAGGACATGACAAGGTGATGTCATCTGACACTAAAAAAGAGGGCCCTTTTACCGGAGAAAACAGGCCTTTTCATTTTAGATGAGTCTTCATTAGTTCATGTCCTAATGAAATGATCACTATGTTAAAACACTGACTTTCACATTAAAGGGAGTGTTGTTGGGAGCTTTAGGAGGTTTTATTACCATGCCTTACAGATTTAGTATTCCATAGGGACTAATCAGAGAAAGAGTTGTCGTGGCCAGTGGCTGCGCGATCACTTAAGTTAATAAATCAGGCACAAAGTAAGCCATCTATAGATGGTGACAAAGTAGAAAGACATGTTCTAATTTTTCTCACCAGAATCATGGATTTCTTTAATCCAGGGGTTTCAAAGACTCACAGTCATTCCAGGGATCCACTACATAAAGGTAAATTTATGATAATTAAATACGTTAAATAACATTATGTAGTAAATTCAAGATCATTCGTTTTATAGTTGGAAATGTCATTACACTCTTTAAAGAAAATTCTCTGTTTTGGCCTATATATCTTTTCTTCGGACCAACTGCAGTTCCTTCATGGACCGCTAGAGGTCTACAGAATCTTGAAATTGGAAAACCCTGGCTTTAATTCATAAGTACATAAGATAAATTTTAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU46541 True 2485 lncRNA 0.35 1 1028708 1031192

Neighbor

gene id symbol gene type direction distance location
CI01000006_01006114_01006327 NA coding upstream 22114 1006114 ~ 1006594 (+)
CI01000006_00993313_01003875 MAPK9 coding upstream 24568 993004 ~ 1004140 (+)
CI01000006_00946696_00969588 GFPT2 coding upstream 57550 946696 ~ 971158 (+)
CI01000006_00926597_00930448 KIAA1191 coding upstream 97507 926285 ~ 931201 (+)
CI01000006_00812192_00902946 ADAMTS2 coding upstream 125604 812192 ~ 903104 (+)
CI01000006_01032572_01040625 CLK4B coding downstream 1380 1032572 ~ 1041142 (+)
CI01000006_01139490_01142592 NA coding downstream 107763 1138955 ~ 1142825 (+)
CI01000006_01149220_01154850 MAT2B coding downstream 117849 1149041 ~ 1155314 (+)
CI01000006_01158519_01160763 NA coding downstream 126537 1157729 ~ 1161006 (+)
CI01000006_01525438_01530330 NA coding downstream 494246 1525438 ~ 1530375 (+)
G40987 NA non-coding upstream 918 1023386 ~ 1027790 (+)
G41008 NA non-coding upstream 20704 978823 ~ 1008004 (+)
G41013 NA non-coding upstream 54240 974176 ~ 974468 (+)
G40919 NA non-coding upstream 122639 904785 ~ 906069 (+)
G40925 NA non-coding upstream 242380 723821 ~ 786328 (+)
G41028 NA non-coding downstream 152873 1184065 ~ 1185743 (+)
G41045 NA non-coding downstream 190898 1222090 ~ 1223864 (+)
G41056 NA non-coding downstream 219213 1250405 ~ 1253695 (+)
G41081 NA non-coding downstream 259385 1290577 ~ 1291505 (+)
G41087 NA non-coding downstream 266974 1298166 ~ 1385513 (+)
G40768 NA other upstream 535682 488407 ~ 493026 (+)
G40767 NA other upstream 545373 360009 ~ 484185 (+)
G40772 NA other upstream 549514 475465 ~ 479194 (+)
G41170 NA other downstream 660873 1692065 ~ 1695821 (+)
G41424 NA other downstream 1614470 2645662 ~ 2660570 (+)
G41591 NA other downstream 1804975 2836167 ~ 2839421 (+)
CI01000006_03734862_03735227 BANF1, BANF1.S, BANF1.L other downstream 2698038 3734554 ~ 3736035 (+)
G41996 NA other downstream 4086014 5117206 ~ 5124149 (+)

Expression


Co-expression Network