G41424


Basic Information

Item Value
gene id G41424
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 2645662 ~ 2660570 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU47032
TTCCCCAGACCCTACTTTGAAAACCCTGAATATGTTCAGTGGCCAGTATTGATGTGTATGAATTTATGATACAACAAATATTTTGTGTCAAAGTGAACACTTTATGGTTGCATAGATTTAGAATTACTAGAATCCCGAATCCTCAGTTTTTGCTGACTAAGGCTGAAATAGATGTTACCGGTTGAACATTGATTGAGTGAGTTAAAGTTATTCACTGTTAATTTGATGAACTCCACTGACATTTTGCACAGAATGTTGTAAACTGAAGCAACAGGCATCTCTGATAATCCAGTGGCCCCCGTTCTGCAGTATGAATGGAAAGTCAAGACCCGTTTACCAGCTGCCAGAGCAAATAACTCAGAGTTACTCTTCGCTTGAAACACACTGTGACAGATCGAGCCAGTTTCTTCCATTCCCCTGCCAGTTTGTGAGATGACCTCAAGGTTGATGGTGCAATAGGGGAATTTAGCATTCCTCACGTAATCGTGGCAGAGTAACCAAGCTCTAGACATTGCAGGTTAACCATTATAGTACTGCACGTCATGTATGTTATTTACTAGCAGAGTATAGCATAACTGACCCCTGATTTGAAATTTTGCTTGTGTGCATACAAGAGTGTGTGAGAGGTTGCTCACACGTGGGTAAATACTCAAGTGTCCAGCATGAATGGGTCAACGAGTGTGTGTTTACATAACACTTATTCTCATTCTTAGGAAACTGGTGCGATAAATGACAGAGCAAAGCAGTTTATTTGTAGTTTACTATATAATTGTGTTGCTCTTTAACAAAAATAACTGAAAAAAAGGCCTTGTATTTGGGATAGCTGGTTATGATTATTAATGAAAGCTGATGAGAGAGATTTTTTGTGACTTTTTCACATTACACAATCCCAAAAAGTGTTAAAAGTGCAAGCAGCAACCTCAAATTCAAACATATCTATGAGCAATGCTTACTGTCTCGCATTAAAAAATAACCGTGACCCCCTACACCAGCCATTTTGCACACATTACTGACAATCTTGTCATTTTAAGCATGCTCCTAATCCTTTAAGAACTAACAGCCAAATGCAACAGTGTTTGAGATTGCATTTAATTGGATTTTTTTCCAAGTATGCAGTGTTTGAACAGTTTAGATGGGGAAAAAACACTCTATTGAATTTCAAAACCCAAATATAACATCAAGAACCTTCTTAGATGTGATTTTTCCTCATCTCATTCTGAATATGCAATTTAGAGCATTTCCCAAGAGCACCATTAGCCTATACAGTGTTGGGGTAACGCTTACTTTTTTTCAAGTAACTAGTAAAGTAATACATTACTTTTAAATTTAGAACAAAATATCCGAGTTACTTTTTCGAATAAGTACCGCAAGTCACTTTGTTTTCCCACTTATTGGCTGACTACTCTCCTGTCCACATGTTGAGAAGAAAACGGAAGTGCTGTGTGCGCTGTGTAAACATGATGATTATTGTAGTTCTAGGGTACGTTTACACGACAACGATATGCTTAAAACAGAGAAGTTTGTTCCTTTGAGTTTTGTCAAAACGATCCCCATTCCCACGAATCCGTGAAAATGACTAAAAATGCTGTATTCTGCTGGCAGGCCATTAGATGGCGATAAAACACTACAGACTGAACGTGTAATGCGCATGTGCATGACGGCATCGTTTTCACAGATTCACTTTTTTGTTGTTTACACGGAGACAGTTTTCAAAAACTTGCATTTTGAAACCCGTTTTCAAAGGTTTTCCTTTTCAGGCACCCAAAACGCCGTTGTCAAGTAAATGAACGGCCAAAACGCATAAAAGTTTTACGTTTTTAGTTGATAATGGTGTCGTGTAAACAGCCCCCTAGACTACATGTGAGCAGGCATTTATTCATCTCACAAAAACAGATTCAGTATCCCTCAAAATGAATTAAAACAGTGAAATGCAAACTCATAATATTACACAAACCTGCAATAATTAATGTTAAAGAATACAAATAAACTTTATGTACTTTTGATAATCCAATTCAACCATACTAACAAGCAAAAACGACATTAAATAAACATCACATTTGTGTTTCATTTTTTTTTGTTTTTATTGACAAAGTAAGAGTGTTGAACTTTCTTCTCCTGCATCCTTTTCTTCTGCAATCCAGAAAAGCAGCACAGCCTGAAAGATTTGTTTGAGCTGCGGCCTCTACTGTACAGATGTGAATTTGCATTTACAAAAAATAACTTTTTTTTGTTGTTATAAGGAAAACAAACAAACAGTCCAGCCCAGATAAGAAAAAGTAACAGAAAAGTAATGTAACGCATTACTTTCCATTAAATGTAACTAGTTAATGCAATATTGTAATGCGTTACTTTTAAAAGTAACTTTCCCCAACACTAAGCCTATGTAGATCGTAGAGACCATTGGTGCCAATAGTTTCTACGATCTACAATGCTTTTGGAAAACGCAGCCCTGGTTTTTGCTGAATAATGCTGATATAGATGTTACCTGTTGAACATTGATTGAGTTTGTTGAAGTTATTGATTGTTTGTGAAGTGAATGAGGCAGAAAATTAAAGATTGAAGATTGACAGATTGTGTTCGGGTCGCCATAGGAAGACAGAGCAGGACAGGTGTAGCTGGATTCATGAAGAGGGAGCATCTAGTGTTGCTCGATCATACAGGTTGTTCTTGGTTCGAGATGGGCAGGTGGAGGTTTATTTTGGGTCATCAGGTGCAGCAATCTTCTCCAGAGTGGGCTCCACACCCCAGATCTCACGGGCGTACTGGGAGATGGTGCGGTCGCTGGAGAACATGCCCGAACCAGCAATGTTGAGGATGACTTTCTTGGTCCATTCCTTGGGTTTCTGTCAAAAGGAGCAGATTTATAAATCATTAAAGTTCATAATTTCTCTCTTTCTATCTTTCTCTTTGCCAATTTAACAAAAAACAGTTTACACTCACCTTATACAAAGCACTGACTTTCTCTTGGCATTTGATGTAGTCTTCATAGTCAGCAAACACCTTGAACCTGTGCAAAAAAAAAACAAAAAACAGATGATTCATATATGAATGTTGTTAAAAGTTGTTAAGACCCATATAGAAGTTAAGCTTTTTTAACTGGAGAAAATGGACTGCAAATGATCACCAGATTCTATGTGAAATGAACAGCAAATGATTGATGTGTAAGGTACAGTACTTTTAAGAGTTATAAGTTATTATTAGCTCCCCATATATTTTGTATATAGTTGTTAAAATGGGGGGAAATACAAATCATTTTGAAAAAGAAAAAAATTTGTTTCCAGAATGGATGGCTGTACAATTTACATTTACTGTAAAAAATAATGCCTATCTTGGTCATTGTATGTGTTTCCTTGTACAACGGGAAAAATGGTGTCTATTACTGACTATCTTTGTTTGTGGCAATGTGTATGTGAAAGTTTCTTGTTCCTGTTTCTCTACCTATCATGGTGCATAAGCATGTTGACAATATCCTTGAAGAGGTCTGGCTGTTTTGGGCTGAAGAATCCTCCTGCGATCTGGTCTATGGCTTGCTTCAGCTCTGGAATACGATTGTAGAACTCGGATGCGTTGTATCTGCAGGTCATGTCATACGCAGTACATACATACACTGTGTGAGTGCTTATTATTCTATCACTAAATCCTAAGTACAATAATAAAAAAAAAAAATTTTAATTTTTTTTTTTTTTTAGTAATAAAATTTGCATATTTTCCCAACCCTCTAGCATCCATGGCTTCGACATCCTCCACTCTCATGCCGAAAATAAAGAAGTTGTCTTCTCCTGCTTCCTCTGCCATCTCCACATTGGCTCCATCCATGGTGCCGATGGTCAGAGCTCCGTTCAACATGAACTTCATGTTGCCTGTTCCAGAAGCTTCTGTGCCGGCTGTGGAGATCTGCTCGGACAGGTCAGATGCAGGGATCACTTTTCAGCAAGGGTAACTCTGTAGTTCTCCAGGAAAATGACTTTGAGGCGGTCGCCCACCACTGGGTCATTGTTGACCACCTCACCAATAGCTGTGATGAGACGAATGATCATTTTAGCCGTGTGGTAGCCTGGGGCAGCCTGGGAAGGATTGAGCAAGAACATAATAACACATACAACAATTCAAATATGACAAAAGAATCAAATAAACCTCTTCATGCTAATCTGACTGCATTTAAGTCAGTTGACACATTGCAAGATTACCTTTCCTCCAATCATAATTGTTCTTGGGGTCCACTGTTTGTTAGGCTCTTTCTTGATACCTGCAAAATAAAAATAACTCATATTTTATGGAATTTTATTTTAATTATTTATTTATGCTTTATTTCTTTTTCATATTTTTTTCTTTTATATTATTTATAATATAAAATATTTGATTTATGTATGTTTATTTTCAATTCCAAAAAACACCCCTAAGTGATAGTGATAATGAGAAGGGGACATGAAGGAGTTAAAGTGCAGAAGACACTCACGGTTGTAGAAAGTGATAATGTGCAGACAGTTAAGCAGCTGCCTCTTATACTCATGGATTCTCTTCACCTGAAGATCAAACATTGAGTTGGGGTTGATCTTTACTTTGTAGTGCTCTTCCAGGTGCACAGCAAACTTCATCTTGTTCTCCTAGAAGAGGTGCGAACATCAAGAGAAATCCATTTTAAACTCCAAAACCCACTGGGCCATTGATACGTGCCATATATTCATCATCTCTAACCTGTTTAACTTTGGCGATATCTCGAATGAAAGCATCGTCGTTGACAAAATTACGAAGCTTTTGCAGCTGATCCAGGTCGCGAATGAAGTCCTCTCCGATTCTCTCTGCAATGACCTCAGCCAGACCAGGGTTGCACATCACCAACCAACGGCGAGGGGTGATACCATTGGTTTTGTTCTGGAACTTGTGTGGATCCATCTCATAGAAGTCTTTGAATATGGTAGCTTTGAGGATGTCCGAGTGGATACGTGCCACACCATTGACTGCATGAGAGCCAACTATGCACATATGAGCCATGTTGACTCTCTTCTGTCCGCCCTCCTCAATGAGAGACATGCGGCGCATTCGGTCCACATCACCGGGGTAACGAGAGGACACGCGCTCCATGTGGCGGCGGTTGATTTCATAGATGATCTCGAGGTGCCGGGGCAGCAGGGACTGGAAGAGGTCAATAGGCCAGCGTTCCAGAGCCTCAGGCAGCACAGTGTGGTTGGTGTAAGCGCAGGTCCTAACGCAGATGTCCCATGCCTTCTCCCAAGATAGTTTTTCTTCATCAACCAGCACTCTCATCAGCTCAGGGATGGCTAAGGCAGGGTGAGTGTCATTCAGCTGAATGGCCACCTTGTCAGGCAGAGCACTGAAGTCTGTGCGCACAATATCCCTGGAGCCGAACTTGGAAGCCTTGAAGCGGCGGATGATGTCTTGGAGAGTCGCAGCCACTACAAAGTACTCCTGCTTCAATCTGAGCTCCTTACCCTCAAAAAAGTTGTCATTGGGGTAGAGCACACGAGAGATGTTCTCCGCCAGGTTCCTGTCCAGCACGGCCTGAATGTAGCCACCAACATTAAAGTCTTTCAGGTTGAAATCGCAAGGGGCTTTGGCAGACCACAGCCTCATGGTGTTTACAATGTTGTTTCTGTATCCAGGTACGGGGGTGTCATAGGGCAAAGCCAAGACAACCTGAGTATCCACCCATTTCACTCCATCTGGGTGATGCTCTGTCCTACCATAGAAGTGCACAGGGCGCATATATTCTGGACGAGCTTTCTCCCATGGGTTACCATACCGGAGCCAGTCATCTGCTTCTTCAACCTGCCAGCCATTGCAGATTTTCTGGTTGAAGATACCAAACTCATAGCGAATGCCGTAACCGTAGGCAGCCAGGCCAAGAGAGGCCATAGAGTCCAGAAAGCAAGCAGCTAGACGACCAAGGCCTCCATTTCCCAGTCCAGCATCTTCCTCCATCTCCTGCAGCTCTTCCATGTCCAGACCCAACTGATACGTGGCTTCATCACAAGCGTTCTCCAGGGCCAGATTCACCATTGTGTTCTGCAAGGTACGGCCCATGTAGAACTCCAGGGAAAGGTAATATACACGTTTGGGGTCTTTCTCGTAATAACTCTGCTGTGTTCTGATCCATCTGCCTACCAAGTGGTCTCTGACTGTGTGCGCGAGCGCAAAGTAATAATCCCGTTTGGTGGATACGTTCCTGTCCTTCACCAGCGTGAAATGCAAATGGCGATTAAAGTTTTTCTTTAAATCTGCCACATTCTCCACACCGGCGAGCCCCTTCACAGAAATCTGCTTCTTTCTATCGTGGTCTGACAGTGGTTTAGACATGGTGACAGAAGACTCGTCTTTGGTTCAGGTAAGAGTGTAAACACCAGACCGCACGCAGCACCCATGTAG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU47032 True 6384 TUCP 0.41 14 2645662 2660570

Neighbor

gene id symbol gene type direction distance location
CI01000006_02616480_02616828 NA coding upstream 28823 2616480 ~ 2616839 (+)
CI01000006_02613864_02614742 NA coding upstream 30902 2613754 ~ 2614760 (+)
CI01000006_02531899_02588907 NRG2A coding upstream 55899 2531816 ~ 2589763 (+)
CI01000006_02490349_02491048 NA coding upstream 154544 2490349 ~ 2491118 (+)
CI01000006_02396895_02399927 CXXC5A, CXXC5 coding upstream 245711 2396468 ~ 2399951 (+)
CI01000006_02665949_02677083 RASGRP2 coding downstream 5379 2665949 ~ 2677215 (+)
CI01000006_02774064_02933983 NRXN2A coding downstream 113494 2774064 ~ 2933983 (+)
CI01000006_03016090_03016706 NA coding downstream 354567 3015137 ~ 3017314 (+)
CI01000006_03102358_03152576 NRXN2A coding downstream 441788 3102358 ~ 3152869 (+)
CI01000006_03164803_03183473 PCNX3 coding downstream 503619 3164189 ~ 3183719 (+)
G41433 NA non-coding upstream 1277 2634103 ~ 2644385 (+)
G41482 NA non-coding upstream 12832 2632214 ~ 2632830 (+)
G41423 NA non-coding upstream 19476 2610231 ~ 2626186 (+)
G41461 NA non-coding upstream 199728 2445724 ~ 2445934 (+)
G41457 NA non-coding upstream 202686 2442612 ~ 2442976 (+)
G41488 NA non-coding downstream 40037 2700607 ~ 2700826 (+)
G41494 NA non-coding downstream 48956 2709526 ~ 2710015 (+)
G41570 NA non-coding downstream 76566 2737136 ~ 2744797 (+)
G41547 NA non-coding downstream 316124 2976694 ~ 3053920 (+)
G41554 NA non-coding downstream 335200 2995770 ~ 3006315 (+)
G41170 NA other upstream 949841 1692065 ~ 1695821 (+)
G40768 NA other upstream 2152636 488407 ~ 493026 (+)
G40767 NA other upstream 2162327 360009 ~ 484185 (+)
G40772 NA other upstream 2166468 475465 ~ 479194 (+)
G41591 NA other downstream 175597 2836167 ~ 2839421 (+)
CI01000006_03734862_03735227 BANF1, BANF1.S, BANF1.L other downstream 1068660 3734554 ~ 3736035 (+)
G41996 NA other downstream 2456636 5117206 ~ 5124149 (+)
G43896 NA other downstream 3109519 5770089 ~ 5771775 (+)
CI01000006_06104927_06109730 NA other downstream 3447914 6104927 ~ 6109820 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) G149268 pygl,LOC104938237 non-coding CM030141.1 CM030141.1 9361332 ~ 9363435 (-)