Gene
RNA
| Item | Value |
|---|---|
| gene id | G41423 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000006 |
| NCBI id | null |
| chromosome length | 13024002 |
| location | 2610231 ~ 2626186 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU47027 | False | 600 | lncRNA | 0.44 | 3 | 2610231 | 2626186 |
| TU47030 | True | 563 | lncRNA | 0.35 | 3 | 2623715 | 2626186 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000006_02531899_02588907 | NRG2A | coding | upstream | 20468 | 2531816 ~ 2589763 (+) |
| CI01000006_02490349_02491048 | NA | coding | upstream | 119113 | 2490349 ~ 2491118 (+) |
| CI01000006_02396895_02399927 | CXXC5A, CXXC5 | coding | upstream | 210280 | 2396468 ~ 2399951 (+) |
| CI01000006_02374902_02382000 | NA | coding | upstream | 227830 | 2374832 ~ 2382401 (+) |
| CI01000006_02274089_02276641 | NA | coding | upstream | 333550 | 2273891 ~ 2276681 (+) |
| CI01000006_02665949_02677083 | RASGRP2 | coding | downstream | 39763 | 2665949 ~ 2677215 (+) |
| CI01000006_02774064_02933983 | NRXN2A | coding | downstream | 147878 | 2774064 ~ 2933983 (+) |
| CI01000006_03016090_03016706 | NA | coding | downstream | 388951 | 3015137 ~ 3017314 (+) |
| CI01000006_03102358_03152576 | NRXN2A | coding | downstream | 476172 | 3102358 ~ 3152869 (+) |
| CI01000006_03164803_03183473 | PCNX3 | coding | downstream | 538003 | 3164189 ~ 3183719 (+) |
| G41461 | NA | non-coding | upstream | 164297 | 2445724 ~ 2445934 (+) |
| G41457 | NA | non-coding | upstream | 167255 | 2442612 ~ 2442976 (+) |
| G41453 | NA | non-coding | upstream | 172779 | 2437230 ~ 2437452 (+) |
| G41452 | NA | non-coding | upstream | 173602 | 2436404 ~ 2436629 (+) |
| G41449 | NA | non-coding | upstream | 179094 | 2430824 ~ 2431137 (+) |
| G41482 | NA | non-coding | downstream | 6028 | 2632214 ~ 2632830 (+) |
| G41433 | NA | non-coding | downstream | 7917 | 2634103 ~ 2644385 (+) |
| G41488 | NA | non-coding | downstream | 74421 | 2700607 ~ 2700826 (+) |
| G41494 | NA | non-coding | downstream | 83340 | 2709526 ~ 2710015 (+) |
| G41570 | NA | non-coding | downstream | 110950 | 2737136 ~ 2744797 (+) |
| G41170 | NA | other | upstream | 914410 | 1692065 ~ 1695821 (+) |
| G40768 | NA | other | upstream | 2117205 | 488407 ~ 493026 (+) |
| G40767 | NA | other | upstream | 2126896 | 360009 ~ 484185 (+) |
| G40772 | NA | other | upstream | 2131037 | 475465 ~ 479194 (+) |
| G41424 | NA | other | downstream | 19476 | 2645662 ~ 2660570 (+) |
| G41591 | NA | other | downstream | 209981 | 2836167 ~ 2839421 (+) |
| CI01000006_03734862_03735227 | BANF1, BANF1.S, BANF1.L | other | downstream | 1103044 | 3734554 ~ 3736035 (+) |
| G41996 | NA | other | downstream | 2491020 | 5117206 ~ 5124149 (+) |
| G43896 | NA | other | downstream | 3143903 | 5770089 ~ 5771775 (+) |
