CI01000006_03102358_03152576 (NRXN2A)


Basic Information

Item Value
gene id CI01000006_03102358_03152576
gene name NRXN2A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 3102358 ~ 3152869 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000006_03102358_03152576.mRNA
CTGGAACCACGTATATTTTTGGGAGAGGAGGAGCACTCATCACGTACACATGGGCTCCCAATGATCGGCCAAGCACCCGGGCGGACCGTTTGGCTGTGGGCTTCAGCACCCAGCAGAGTGATGCCATCCTGGTGCAGGTGGAGAGCAGCCAGGGTCTCGGAGACTACCTGCAGTTGCACATTATGTTTGACATCTGGGCATTAAAGCCAGGTGTTTTGCACTTTAGCCAGCAGGGACAGCCTATTGACAGACATCAGCATCTCAATGAGAACCTGTCAGTTGAGGAACAAGGGAAGGTTGGCGTGATCTTCAATGTGGGCACAGATGACATCACCATAGATGAGCCTGCGGTTACCGTGAACGACGGCAAGTACCACGTGGTTCGCTTTACACGTAGCGGTGGCAATGCCACCCTCCAAGTGGACAACCAGCCCGTCATCGAGCGCTTCCCATCAGGGAGCTGCCTTCCTCTCATAGATGCTGTTCCACAGGAAGACATTTTCTCTGTCTCTAATAGCAATCCTGTCTTTCCCGTCCTCATTTTTCAATCGGTTTCTCCGATGTGCTGCTTCACGGCAGCAGAGAATTTGCCACACATGAGCTCTTTTAACAGGCTTATAAGAGTGGGAGGTTTGGCCCTCATTCAGGTTGCAGGGTGGGTAGGACGAACGCAAGGCTTGTATCTCACACGGCTGTCACAGAAGGAACATGACACAGTATGTGGGAACATTGATAATGAACGGCTTGCAATAGCCAGGCAAAGAATTCCATACAGACTTGGTCGGGTAGTTGACGAGTGGCTACTCGACAAAGAGGAGCCACCTCAGGCTCTGGGATTGATCTTTGCCATCATGTTTAATACAACATTTTGTCTCCTGCACTATCTGGGTCAGAAACGACAGCCATTAGAATTGGAGATTTCCATCGCCAGCCAGGCGGCCATAAAAGTGGGAGGTCAGGATAAGGGCCGACCATTCCAGGGCCAGATTTCAGGTCTGTACTACAACGGGCTGCAAGTGCTGAAACTGGCCGCTGAGGGGGATCCGAATGTGCAGAACTCAGATGACCTGCTGGTGGCGTCAGCCGAGTGTCCCAGTGATGATGAGGATCTGGAGGAGTGTGAGCCTGGCACTGGAGGTGAACTTGTGTTGCCCATAATTACCGTGGACACCCAAGACCCCCTTCCCATGGCCACCCGTTACCCTGCCATCCCCGCCCCTCCCACTTCCCTAACCCCTCTCCAGACCACCAAAGAGTCCCTCGTTCTGTCCGACCCCCGCCCGCCATGCCCTCCGGACCAGGAGGACTGCGGCGACCCCATGGAGGTGTCGGCCTTCGGCTCCGGAGAAATGACGGAGTCCGATGACGAGGACTTTTACAAAAACTCCCCCATGGTCACGGACAGGACAGTCCTGCCGCCGCCTCCCGCCGTGGGCAAGAGCGGAGGCCAGGGCGCAGGTGACCACCGTCCTCCAGCCCCTGCCCCCACCACCCACCCCAACCAGCTCCACATCCCCGCGGGCAAAATGAACACCCGTGACCAGGTTCTCCTGCCACCTGCCCCGTCCTCCCGTCACACTCCAGGTCTAACCTACCCGCCTGATTTCCCCCATGTGCCCACAGCTCACCCCACCGACTTGATGGAGAAGGGCCGCCCGGGCGCCGTGGAAGTGATCAGGGAGTCCAGCAGCACCACAGGCATGGTTGTCGGCATTGTGGCGGCTGCCGCCCTCTGCATCCTCATCCTCCTTTACGCCATGTATAAGTACCGCAACCGAGACGAAGGTTCTTATCAGGTGGACCAGAGCCGCAACTCGGGCTCCGAAAGCAACGGTGCCGTAGTGAAAGAGAAGACGCCGAGCACGACCGCTGCCATCGCCAAAACGACTACCAAGGGCAAGAAGAATAAAGACAAGGAGTATTACGTCTGAGGGAACGAGCGAGGAGGAGGTTCACAGACAGGAAGTGTGCTGAGGATTTAAAAACTTCAAATCACCTCCTCCGCATCCTCAAGCATTTAAGCTACACAATCTTCTGTTTACTTCTCAAAAAGTTTTTCTGCCACCGAAAGATACGGACGTAGGGAATGAGGAGGAAGGCACTAACGGATAGATCCTCCTTTCGTTGCTGTCTTGCAAAGCCATTGTTGTATGTAATTTTATCTCTATCATGTCTAAAGAAATTCTTCCATTACATTCCAGATGATGTAATGCCCTCTTTGCGA

Function

symbol description
nrxn2a Acts upstream of or within chemical synaptic transmission and motor neuron axon guidance. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in nervous system and spinal cord neural tube. Orthologous to human NRXN2 (neurexin 2).

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG:

id description
K07377 NRXN; neurexin

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000006_03102358_03152576.mRNA True 2224 mRNA 0.54 11 3102358 3152869

Neighbor

gene id symbol gene type direction distance location
CI01000006_03016090_03016706 NA coding upstream 85044 3015137 ~ 3017314 (+)
CI01000006_02774064_02933983 NRXN2A coding upstream 168375 2774064 ~ 2933983 (+)
CI01000006_02665949_02677083 RASGRP2 coding upstream 425143 2665949 ~ 2677215 (+)
CI01000006_02616480_02616828 NA coding upstream 485519 2616480 ~ 2616839 (+)
CI01000006_02613864_02614742 NA coding upstream 487598 2613754 ~ 2614760 (+)
CI01000006_03164803_03183473 PCNX3 coding downstream 11320 3164189 ~ 3183719 (+)
CI01000006_03232003_03242938 NA coding downstream 79134 3232003 ~ 3243362 (+)
CI01000006_03294091_03298089 SLC29A2 coding downstream 141119 3293988 ~ 3298671 (+)
CI01000006_03319103_03319306 NA coding downstream 166234 3319103 ~ 3319520 (+)
CI01000006_03327370_03334117 RIN1A coding downstream 174501 3327370 ~ 3334702 (+)
G41547 NA non-coding upstream 48438 2976694 ~ 3053920 (+)
G41538 NA non-coding upstream 69648 3022098 ~ 3032710 (+)
G41554 NA non-coding upstream 96043 2995770 ~ 3006315 (+)
G41570 NA non-coding upstream 357561 2737136 ~ 2744797 (+)
G41494 NA non-coding upstream 392343 2709526 ~ 2710015 (+)
G41605 NA non-coding downstream 44967 3197836 ~ 3198286 (+)
G41606 NA non-coding downstream 45693 3198562 ~ 3198765 (+)
G41614 NA non-coding downstream 96254 3249123 ~ 3250070 (+)
G41543 NA non-coding downstream 105180 3258049 ~ 3263442 (+)
G41555 NA non-coding downstream 115795 3268664 ~ 3336009 (+)
G41591 NA other upstream 262937 2836167 ~ 2839421 (+)
G41424 NA other upstream 441788 2645662 ~ 2660570 (+)
G41170 NA other upstream 1406537 1692065 ~ 1695821 (+)
G40768 NA other upstream 2609332 488407 ~ 493026 (+)
G40767 NA other upstream 2619023 360009 ~ 484185 (+)
CI01000006_03734862_03735227 BANF1, BANF1.S, BANF1.L other downstream 576361 3734554 ~ 3736035 (+)
G41996 NA other downstream 1964337 5117206 ~ 5124149 (+)
G43896 NA other downstream 2617220 5770089 ~ 5771775 (+)
CI01000006_06104927_06109730 NA other downstream 2955615 6104927 ~ 6109820 (+)
CI01000006_06122278_06122736 NA other downstream 2969166 6122035 ~ 6122751 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00015553 LOC107572116 coding CM030132.1 CM030132.1 12240536 ~ 12244228 (+)