CI01000006_03294091_03298089 (SLC29A2)


Basic Information

Item Value
gene id CI01000006_03294091_03298089
gene name SLC29A2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 3293988 ~ 3298671 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000006_03294091_03298089.mRNA
CTATAAAATCAATGTTATATGGTTGTGTATTGAGGTCACAAAACTTGATCATGATCTAACAACAAAAATGTAACTTTTGCTTTTTTTTTCAGAACATTTCAAAATGAGGATTTGTAAGGGAACATCAGATAAGCATGGCCTTGTGGCTGTTATCTTTTTCTTGTTGGGAATGGGAACTCTGCTTCCATGGAACTTCTTCATAACTGCAATGAATTATTTCACTGACCGTTTGAGAAATGGTACAGATTCTTCACACTCACAGTCAGACCCATACATGTTTGAGAACATGATGGTGCTGTTAGCCCAGCTTCCCTTGCTGTTATTCACACTTCTCAACTCCTTTCTATACCAGCACATTGCGGAGAAGATGCGGATTGCGGGTAGCATGGTCTTCATATTTCTTCTCTTCATTCTCACGGCCATTTTAGTGAAAGTTAAGATGGACCAGGACCAGTTCTTTTCAATTACCATGGCAACAATCTGGTTTATTAACATGTTTGGGGCCATTCTGCAAGGTAGTCTGTTCGGTCTGGTCGGTAAGCTACCCCCGAGATTCAGCTCCCTGTTTATGAGTGGACAGGCAGTGGCAGGAATCTTCTCGGGTCTTGCCATGCTGTTATCGAATATCTTTAAAACTGACTCCGAGAGTTCTGCCCTGGGATATTTCATAACTCCCTGTGTCGCCACTCTACTTACTTTGTGCTGTTATCTCATACTTCCGCATCTGAGATTTGCCCAACTTCATTTGGAAAATGTGTCCCCTAAAACTGCAGAGACACGGAAAGAGCCATCAGCAGATAGATCTGAGATGGTTAAAGTGAAGTTAGATAATGGTGACAATGGATTTGACATCATTGGTGAAACCGAAGCATGTAAAAAGCTGAATGAGCTCCAACAAGAACCTGAGGAGAAGTCAACTGTGCCACGGGTCTTCAAAAAGATTTGGGTGATGGCATTATGTGTGACATGCGTGTTTGCCGTCACACTGTCCGTTTTCCCAGCAATTACTGTAAATACAAAATCTTCTGGCTTATTTGAAGGGAAAGAGAACATCTTCATACCTTTGTGTTCATTCATTGTCTTCAGTGTGATGGACTGGATTGGCAGAAGTCTCACTTCTCGTCTTCAGTGGCCTTCGATGAAGAGTAGATTATTCCCTCTTTTCGTGGGATTACGGGTAGTTTTCATTCCTGCCCTCATGCTCTGCAACGTTCAGCCTCGCTTCTATCTCCCAGTCTTTTTCAATCATGACATGGCTTATATTATCATAATGTCTTTGTTTGCCATGACAAGTGGATATTTTGCCTCCCTCTCCATGAGCTATGCTCCACAGCTCGTGAGGCCTAAAGATGCAGAGACAGCAGGGGCTCTGATGACCTTCTTCCTGACTTTGGGACTCTCTCTGGGTGGCGCTCTCTCTTTCGGCCTTAAAAAAATTCTTTAGGAAAAATCTCATAAGCTGACACTGCTGTTCATTATCCACCAACATAAACATGTTGAGGCCTGGGTATACTTTTTTTTTTTTTCTTCACTCCATCTAGTGCACAACTGAGCCTTCAAATCTTTCAAAGTACACTCCATTTCCCACGAGCATGGATGGACACATTTGGTGCATGCATACATGCAATGTTGTCCACGCAGCATAAAAAAGGCTGCACGTACATGGTGTGCATAGACATCAGCAGACAGCGTAGTGACGAAAATTATGTCACACGAGATGGAGCAAAACACAGTTTTTAAAATCTAATGAAGAAACAAATTTAAGTACTGTAGAGGTTGTAAAATTCTCTTTTAATCTTTTGTATTTATGTGCCTTCATTTCACTTTTGCACTTTCATGGTTTTTTGTTTTTTTTTTTTTTAAAGGGAAATATTCACATTTACTGTTTTATGGGTTTTTTGAGTGTTCATGTTTTTTTATTATTATTTTTATTATTATTGGTATTTTTAATAATTTCTTTGAAATATCTTAAACTGTAACTGTTTATCTTTTATATTTTGTATGTTGCTTTTTTTAGCTAACTTTA

Function

symbol description
slc29a2 Predicted to enable nucleoside transmembrane transporter activity. Predicted to be involved in nucleobase transport and uridine transport. Predicted to act upstream of or within nucleoside transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of plasma membrane. Predicted to be active in basolateral plasma membrane. Predicted to be integral component of membrane. Orthologous to human SLC29A2 (solute carrier family 29 member 2).

NR:

description
Zgc:110527

GO:

id name namespace
GO:0006810 transport biological_process

KEGG:

id description
K15014 SLC29A1_2_3, ENT1_2_3; solute carrier family 29 (equilibrative nucleoside transporter), member 1/2/3

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000006_03294091_03298089.mRNA True 2026 mRNA 0.40 12 3293988 3298671

Neighbor

gene id symbol gene type direction distance location
CI01000006_03232003_03242938 NA coding upstream 50626 3232003 ~ 3243362 (+)
CI01000006_03164803_03183473 PCNX3 coding upstream 110269 3164189 ~ 3183719 (+)
CI01000006_03102358_03152576 NRXN2A coding upstream 141119 3102358 ~ 3152869 (+)
CI01000006_03016090_03016706 NA coding upstream 276674 3015137 ~ 3017314 (+)
CI01000006_02774064_02933983 NRXN2A coding upstream 360005 2774064 ~ 2933983 (+)
CI01000006_03319103_03319306 NA coding downstream 20432 3319103 ~ 3319520 (+)
CI01000006_03327370_03334117 RIN1A coding downstream 28699 3327370 ~ 3334702 (+)
CI01000006_03350988_03356496 NA coding downstream 52093 3350764 ~ 3357157 (+)
CI01000006_03412397_03437333 MARK2A coding downstream 113726 3412397 ~ 3437710 (+)
CI01000006_03441003_03442001 NA coding downstream 141985 3440656 ~ 3442955 (+)
G41513 NA non-coding upstream 5252 3283664 ~ 3288736 (+)
G41502 NA non-coding upstream 16984 3269964 ~ 3277004 (+)
G41543 NA non-coding upstream 30546 3258049 ~ 3263442 (+)
G41614 NA non-coding upstream 43918 3249123 ~ 3250070 (+)
G41606 NA non-coding upstream 95223 3198562 ~ 3198765 (+)
G41520 NA non-coding downstream 1414 3300085 ~ 3315791 (+)
G41506 NA non-coding downstream 40568 3339239 ~ 3344280 (+)
G41526 NA non-coding downstream 58864 3357535 ~ 3359262 (+)
G41542 NA non-coding downstream 64324 3362995 ~ 3365567 (+)
G41566 NA non-coding downstream 150779 3449450 ~ 3455035 (+)
G41591 NA other upstream 454567 2836167 ~ 2839421 (+)
G41424 NA other upstream 633418 2645662 ~ 2660570 (+)
G41170 NA other upstream 1598167 1692065 ~ 1695821 (+)
G40768 NA other upstream 2800962 488407 ~ 493026 (+)
G40767 NA other upstream 2810653 360009 ~ 484185 (+)
CI01000006_03734862_03735227 BANF1, BANF1.S, BANF1.L other downstream 430559 3734554 ~ 3736035 (+)
G41996 NA other downstream 1818535 5117206 ~ 5124149 (+)
G43896 NA other downstream 2471418 5770089 ~ 5771775 (+)
CI01000006_06104927_06109730 NA other downstream 2809813 6104927 ~ 6109820 (+)
CI01000006_06122278_06122736 NA other downstream 2823364 6122035 ~ 6122751 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location