CI01000006_06122278_06122736


Basic Information

Item Value
gene id CI01000006_06122278_06122736
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 6122035 ~ 6122751 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000006_06122278_06122736.mRNA
CAATATATTCACCTCTTAAGCAGCCTTGTGCACAGTCTAAATTTGTCATCCAAGAGGTAAGCATCAAATTTCTTTAAACTTTACACCAAAAGCTATCTTTGATATGAAAATTAAACAATCCTCAAAATTAAAACCTTTACTTGCACTTCTTTATACAACAGCGGATGAATAGTTTTGTTTGTTTTCTCTAGATTTAAACATGTGGGCAGAGAATGACTTGTGTCCAGGTGTGCCATGTCTCGAAAGCTACACGGAGCCCGTGAATGGTAAAGTATACCTAATGTATCATGGGACCTCTCGACATGCTGCACAGCAGATCATGAGCCGGGGCTTTCGGCCATCTCAAGGTGGAATGCTGGGACGTGGGGTCTACCTCAGCCGAGATCTTAACAAGGCCAGCAGATACCCGCTTCATTTGCCTGAACATGAAAGGGCTGTTATTAGAGTGAGGGTCAATGTCGGGAGAGTGAAGAAGATTGACCATCAAGGTCATCCACTGCAGAAAACTTGGCATGATCAGGGGTATGACACTGCCTGGTGCCCTCCAAACTGTGGGATGGTGAGAAGTGGTCTTGAAGAAGACTGTGTTTGGGATCCACGTCGGATTCAGATCGTTGATGTAATTTACCCAAAGGTGCAATGTGGTTATTATTGTTAAAAAGAAAAACCCAAA

Function

NR:

description
interferon-inducible protein Gig2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000006_06122278_06122736.mRNA False 673 mRNA 0.43 1 6122079 6122751

Neighbor

gene id symbol gene type direction distance location
CI01000006_06111210_06113067 NA coding upstream 8956 6111107 ~ 6113123 (+)
CI01000006_06104927_06109730 NA coding upstream 12259 6104927 ~ 6109820 (+)
CI01000006_06100199_06103495 FBXO40.1 coding upstream 18556 6100199 ~ 6103523 (+)
CI01000006_06095035_06097240 FBXO40.2 coding upstream 24839 6095035 ~ 6097240 (+)
CI01000006_06049283_06057849 TRPC6, TRPC6A, TRPC6B coding upstream 63203 6049283 ~ 6058876 (+)
CI01000006_06136379_06136891 NA coding downstream 13065 6135816 ~ 6137257 (+)
CI01000006_06142449_06142925 GIG2I coding downstream 19548 6142299 ~ 6143068 (+)
CI01000006_06146799_06148260 NA coding downstream 23978 6146729 ~ 6148405 (+)
CI01000006_06171151_06179449 PVRL1A coding downstream 48400 6171151 ~ 6181375 (+)
CI01000006_06192438_06193928 NA coding downstream 69687 6192438 ~ 6194004 (+)
G43990 NA non-coding upstream 1344 6120358 ~ 6120735 (+)
G43988 NA non-coding upstream 11673 6110166 ~ 6110406 (+)
G43970 NA non-coding upstream 49373 6072397 ~ 6072706 (+)
G43887 NA non-coding upstream 317918 5792917 ~ 5804161 (+)
G43898 NA non-coding upstream 331165 5789421 ~ 5790914 (+)
G43908 NA non-coding downstream 29122 6151873 ~ 6154727 (+)
G43904 NA non-coding downstream 71418 6194169 ~ 6199969 (+)
G44009 NA non-coding downstream 150187 6272938 ~ 6273227 (+)
G44010 NA non-coding downstream 152254 6275005 ~ 6275234 (+)
G44012 NA non-coding downstream 162897 6285648 ~ 6285875 (+)
G43896 NA other upstream 350304 5770089 ~ 5771775 (+)
G41996 NA other upstream 997930 5117206 ~ 5124149 (+)
CI01000006_03734862_03735227 BANF1, BANF1.S, BANF1.L other upstream 2386101 3734554 ~ 3736035 (+)
G41591 NA other upstream 3282658 2836167 ~ 2839421 (+)
CI01000006_07167131_07168925 NA other downstream 1044038 7166778 ~ 7168925 (+)
G44872 NA other downstream 1233601 7356352 ~ 7387884 (+)
G45178 NA other downstream 1499240 7607604 ~ 7683671 (+)
G45265 NA other downstream 1761116 7883867 ~ 7920355 (+)
G45336 NA other downstream 1896591 8019342 ~ 8021951 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_019579 gig2d coding NC_007132.7 CM002905.2 22692643 ~ 22693730 (-)