G43970


Basic Information

Item Value
gene id G43970
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 6072397 ~ 6072706 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU49910
AACTCAAATTTTTTCCTCTCTTGCACTTCTTGGATTTTGAAAACATATTCCAGGGAGGCGTCATAGAAGACCTGTCTTTCCTTATTTATCTGGGTGTCTGCCTCTTGCAAAAGGGACTCTTTCTTTCTGGAAGACAGGCTTAAGTGCTTCTCCAAAACCGTGTAATATTTCTCAGTCTCCTTGTCAAATTTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU49910 True 192 lncRNA 0.33 2 6072397 6072706

Neighbor

gene id symbol gene type direction distance location
CI01000006_06049283_06057849 TRPC6, TRPC6A, TRPC6B coding upstream 13521 6049283 ~ 6058876 (+)
CI01000006_06038315_06045317 ANGPTL5 coding upstream 26713 6038315 ~ 6045684 (+)
CI01000006_06006532_06022059 POLQ coding upstream 50215 6004802 ~ 6022182 (+)
CI01000006_05987812_05989546 NA coding upstream 81860 5987760 ~ 5990537 (+)
CI01000006_05977013_05979433 GUCA1D coding upstream 92507 5976481 ~ 5979890 (+)
CI01000006_06095035_06097240 FBXO40.2 coding downstream 22329 6095035 ~ 6097240 (+)
CI01000006_06100199_06103495 FBXO40.1 coding downstream 27493 6100199 ~ 6103523 (+)
CI01000006_06104927_06109730 NA coding downstream 32221 6104927 ~ 6109820 (+)
CI01000006_06111210_06113067 NA coding downstream 38401 6111107 ~ 6113123 (+)
CI01000006_06122278_06122736 NA coding downstream 49373 6122035 ~ 6122751 (+)
G43887 NA non-coding upstream 268236 5792917 ~ 5804161 (+)
G43898 NA non-coding upstream 281483 5789421 ~ 5790914 (+)
G43903 NA non-coding upstream 298448 5771881 ~ 5773949 (+)
G43942 NA non-coding upstream 629474 5442465 ~ 5442923 (+)
G43934 NA non-coding upstream 644079 5428100 ~ 5428318 (+)
G43988 NA non-coding downstream 37460 6110166 ~ 6110406 (+)
G43990 NA non-coding downstream 47652 6120358 ~ 6120735 (+)
G43908 NA non-coding downstream 79167 6151873 ~ 6154727 (+)
G43904 NA non-coding downstream 121463 6194169 ~ 6199969 (+)
G44009 NA non-coding downstream 200232 6272938 ~ 6273227 (+)
G43896 NA other upstream 300622 5770089 ~ 5771775 (+)
G41996 NA other upstream 948248 5117206 ~ 5124149 (+)
CI01000006_03734862_03735227 BANF1, BANF1.S, BANF1.L other upstream 2336419 3734554 ~ 3736035 (+)
G41591 NA other upstream 3232976 2836167 ~ 2839421 (+)
G41424 NA other upstream 3411827 2645662 ~ 2660570 (+)
CI01000006_07167131_07168925 NA other downstream 1094083 7166778 ~ 7168925 (+)
G44872 NA other downstream 1283646 7356352 ~ 7387884 (+)
G45178 NA other downstream 1549285 7607604 ~ 7683671 (+)

Expression


Co-expression Network