CI01000006_06100199_06103495 (FBXO40.1)


Basic Information

Item Value
gene id CI01000006_06100199_06103495
gene name FBXO40.1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 6100199 ~ 6103523 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000006_06100199_06103495.mRNA
GGTAGACAAAGGACCCAAACATCCAAGCTTCATCGCCACTGTGAGAGCTGCCACAACCGCCGCTGCAAGACGGCAGTTGAGATTTCTGTGTCATGTGCGATCATCAGCTGCCGTTTGTTGTGCGGTGCCGTGTTTCACCTGTGCAAGGAAGAAGAACACATGCTTTTGTGTCCCAATGAGAGGGTGCCTTGTCTCAACGTTGAAAATGGCTGCCCATTCACCATGTGCCGCTCGAACCTAGCTAAACACTTGGCGGTGTGTCCTGCTAGTGTTGTCTCCTGCTCCATGGAGTGGAACCGATGGCCCATTGAAGAGTCTGAGACCCCTGAGTTCTATAAGAATGTTTTGAAGGAGAACTACGCTCAGGAACCTTTGGATCTCTCGATGGCTCTGAGGGACCAGCAGCGTCTGTTTCGTTCTCTTAAAATGAAGAATATCTTCCCTGAACTTATTGAAAAGCTGGCTGAGGAGCCTTCAGTTGCAGTGCCAGAGGGGGCCGTGGGAGGGGTACCGTTCTCAAATAGAGTCGAGGAAGCGTCTGTGTCTTCAAGCACGGAAACTGAGGAAGGAGGTCTGACTCAGGAGGAACGAGAAGAATTGGCGAGGAATCCTATTGTGGTGAATCTCGAAAGCTATAATATTTGGGAAAGAATGTTTAGCATGGAATTGAGCGGCTGCAAGCACACGATAAAATCTTTGGGGAAAAAATCTGAATCCTCTCATGGTAATGAAATAAAGCCACAAGCAAACCCAAGCAGGTTAGAAGTCTTACAGGAAGAGCAGCAAATGCAGATCGACAGTCAAGATGCAGCTACTGACATCCCTCAATACAACGCATATGAAATGGATGAGCATAAATTCCTCATCGCCACATCCCTATTTGCATGTGACACAAGACCCGAAAAGAAACTAATTTACGAACATTTGGAGCCCATGAAGATTAAAACAGTCCGCACTTTCAAAGTCCCAACCAGCTTCAAAGCCAAACACAGTCGCATTCGAAACCCCTCGCATAACAAGAAGGTGAACGCAAGCGTAGACACTTCTGACCTAGGAGTTGAAATCGATGACATGCCAAAATGGGATGAAGTTCAAGCTACTCTATTGTGCTCTTTAGAGAGAGAACTACGGGGGCATCTCATAGCTGAATCAGTGTCCACAGACGCACTTCTTCTGGACATTGGAACTCAGACATATGATTTCTACTCAGCACCTTTCAAAGCAGAGACCTCGCTGGCTGACATTACTGCTGACCGGGCTTTGAAACTTCATGTCCACATTCAGGCCGAGAGCGTCACCAGAAGGCACAACAAATCCAGCTCTGCGTTTACATACCTGTGCAACCACACGTTCAGACGGGATGAGTTTCCTTCACACTACAAGAATGTTCACTCTGATATCCAGAGTTGCGTCAGTGGATGGTTTGAACAGCGATGCCCTCTCGCCTACCTGGGCTGCACTTTTATTCAGAGAAGGTTTCAGCCCAGCTCTCACAGAGCGACGGTCTTCTATGACAAAGAGCTCAGCACCTTCTGCCTCCGACCAGAGGTTTCAGACACACTGTATGAAGGTGTAAAAACGGTGACCGTGGAAAGAAAGCGTGCACGCAATGCAGACGCTCTGAGCAGGCTACCTTTTGAGGTTCTGGTCCATGTTGCTAGATTTCTCGACAGCTTCACCCTGTCCCAGCTGGCTCTGGTCTCCCGTCTCATGAGGGAGGTATGCAGCACCTTGCTTCATGAGAGAGGGATGGTCTCACTGAAGTGGGAGAAGAAGGTCTACTCTCATGGTGGATGGTGCTGGAGAAGCAAGAAGAGGGTTTGGCAGTTTAGCAACTTGTTCTCCACTGTGGACAGCTGGTGCTTCGACAGACTGCCTCCGATTTCTGAACATCTAAAGGTTTGTCCATACTACCAGAGGGAGAGTAAGACAGCACCTGTTCCTTTGACTGGTGTTCATGAGTGCCATGAGAAGAAAGCAAACAGGAATCAGAGTCTTGTCTCCATGTTCATTAAAAACAATTAGAATCTGTATTACAGTAACAGACAATGAA

Function

symbol description
fbxo40.1 Predicted to enable ubiquitin protein ligase activity and zinc ion binding activity. Predicted to be active in cytoplasm. Orthologous to human FBXO40 (F-box protein 40).

NR:

description
unnamed protein product, partial

GO:

id name namespace
GO:0004842 ubiquitin-protein transferase activity molecular_function

KEGG:

id description
K10307 FBXO30; F-box protein 30

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000006_06100199_06103495.mRNA True 2053 mRNA 0.48 2 6100199 6103523

Neighbor

gene id symbol gene type direction distance location
CI01000006_06095035_06097240 FBXO40.2 coding upstream 2959 6095035 ~ 6097240 (+)
CI01000006_06049283_06057849 TRPC6, TRPC6A, TRPC6B coding upstream 41323 6049283 ~ 6058876 (+)
CI01000006_06038315_06045317 ANGPTL5 coding upstream 54515 6038315 ~ 6045684 (+)
CI01000006_06006532_06022059 POLQ coding upstream 78017 6004802 ~ 6022182 (+)
CI01000006_05987812_05989546 NA coding upstream 109662 5987760 ~ 5990537 (+)
CI01000006_06104927_06109730 NA coding downstream 1404 6104927 ~ 6109820 (+)
CI01000006_06111210_06113067 NA coding downstream 7584 6111107 ~ 6113123 (+)
CI01000006_06122278_06122736 NA coding downstream 18556 6122035 ~ 6122751 (+)
CI01000006_06136379_06136891 NA coding downstream 32293 6135816 ~ 6137257 (+)
CI01000006_06142449_06142925 GIG2I coding downstream 38776 6142299 ~ 6143068 (+)
G43970 NA non-coding upstream 27493 6072397 ~ 6072706 (+)
G43887 NA non-coding upstream 296038 5792917 ~ 5804161 (+)
G43898 NA non-coding upstream 309285 5789421 ~ 5790914 (+)
G43903 NA non-coding upstream 326250 5771881 ~ 5773949 (+)
G43942 NA non-coding upstream 657276 5442465 ~ 5442923 (+)
G43988 NA non-coding downstream 6643 6110166 ~ 6110406 (+)
G43990 NA non-coding downstream 16835 6120358 ~ 6120735 (+)
G43908 NA non-coding downstream 48350 6151873 ~ 6154727 (+)
G43904 NA non-coding downstream 90646 6194169 ~ 6199969 (+)
G44009 NA non-coding downstream 169415 6272938 ~ 6273227 (+)
G43896 NA other upstream 328424 5770089 ~ 5771775 (+)
G41996 NA other upstream 976050 5117206 ~ 5124149 (+)
CI01000006_03734862_03735227 BANF1, BANF1.S, BANF1.L other upstream 2364221 3734554 ~ 3736035 (+)
G41591 NA other upstream 3260778 2836167 ~ 2839421 (+)
G41424 NA other upstream 3439629 2645662 ~ 2660570 (+)
CI01000006_07167131_07168925 NA other downstream 1063266 7166778 ~ 7168925 (+)
G44872 NA other downstream 1252829 7356352 ~ 7387884 (+)
G45178 NA other downstream 1518468 7607604 ~ 7683671 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_019584 fbxo40.1 coding NC_007132.7 CM002905.2 22726759 ~ 22730832 (-)