G43903


Basic Information

Item Value
gene id G43903
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 5771881 ~ 5773949 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU49842
TCTCTCTTTTGCTGTTGCTGCTGCTGCTGCTTCCTTCTTTCCTTTGCTGTTTCTGCTTCCTTCTCTCCTTTGCTGCTTCTTCTTCCTTCTCTTTGCTGCTGCCGCTGCTTCCTAGTCTTCTTTGCTGCTACTGCTGCTTCCTTCTCTCCTTTGCTGCTACTGCTGCTTCCTTATCTCCTTTGCTGCTTTCCTTCTATCCTTTGCTGCTGCTGCTTCCCTTTCCTCTTTTTCTCTTGATTTTGCTGCGGCTTCTACTTATTCTTCCTGAGGTTTTTTTACTCATCGTCATCTACCTCTTCCTCCTTTTCTTATTCTGCCTTTGCTGTGGCTGCCTCTTCCCCTGCTTTTCTTCATCACCACCTTCCTTTTCATCTCCATCTTCATTTGCTGCTTCTTCCTATTCTCCTTTTCCATCATCATCATTATTATCATCATCATCATCATCATCATCTTCACCTTTAGAATTAGAATGAGCTATTATATTTAAAGTCTATTGTCACATTAAACTCAGTTTGATTTAAAGTTAATTTGTTTGCCAAAATCCTTGTGAAATGATCTCAGATCCCTGAAACAAATTTGGTGTGAAAACACCAGGAGATATCTGATGATGGGATCTGCATGAGGTGGCTGAGCTTAGGCTGTGTTCATTAAGCACTCTGCCACCTATAGTTTCAGTTTTTTCCCCTTTATTTACATCACCCTTGTAAGTTTGAGCCAAAAATGAGAAATGTCGGTAATCACAATAGATGTTTTGCATTTAAAACGGCACAAGAACCAGTCATAATTCCTTAAGATCTTTACCACAGACAGCCTCCCTCAACAGGCGGAATAAGCGAGCATTGCGAGGCGGCTTATTTTTAGTGCATCAAAACAGAGCACAAAAAACCCCTAGAACAAAACAGTTTTAACGTTCATGTGCTCGATGCTTGACACGTAGCGCTAACCTGGTTTTTGTTTGTAGCAGTCTGGCTCTTGAGAGCTTCACTCTTGTGTAATGCTCAAGCTTTTCAGTGGAAACACTTTTATAGACAGACAGTGGCAGAGAGGCAGAGACACGGCGAGGCTCTTTGATTGTTTTTTTTTGTTTTTTTGTATTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGCTTTGTTCTTTCATTGCAAACTTTCTGTTTTTATCCTTCCTGTTCTGAGCGGTTTGATTTTTATCAGTGCTCACAACGGTGACACCAAGCAAGTGGCTTTGCCCTCCACCTCCTCCGCTCTCTCGTCTTCAGGAGAAGTTGCTGAAGAATGGTATTAGGTATGTCGTGTGTATTGTGGTGTACCATTTCAGTCACACACATACACACACACACACACACCCCTCGCTCCTCTCTGCTGGTGCACGCCGTCTCTGTTTGTTTTATTGTGGACTTGGCAGAGCGCCAGTCTGGGCCGCCTGCCACAGCCCAGGGTACAGTATGTACAGTGAATCTTGCGCCAGTTTTTTTTTTTTTCTTTCCTGTGTTGTCTTTTTTCAAATTATTGTCTGACAGCGGTGGTTGTGGTAGCTGTTTTGTTTTTTGTTTTTTCAGGGGCTTGCGAGGCCTCACGTCCTGGAGTTTGGGTGGAAGTGCACTGCAGTGAGAGGCTGATAATGGAAAAGTGCGTGTGTGTGTTTTCTCTGGTTTAAGGTCAACATGGTCTGGGAGCTGCTGGGTAGTGAGGCAGCACAGCACTGAAGCAAAAAAAAAGGGGGGAAAAAAGTGACTCAGCCATTTGGAGCACGACTAGGCTATTAGTGTTATGTGAGCTTCCCTTGTGACTTCAAAGAGTGCAGAGCGTGGTCTGGGTAGGCTAGCCAAGGGACATATTTTGATCCATTTTTGAAAGGGGAGGCAAAGCTTTTCGGAGGGATTACAGATCAACATAGGCTGTTTGGGATAAATCATCCATATTTTTAACTTTTTTATATATATAATTATTATTTATTTATTTTTTTTAATAAAAAAAATGCAGCTGTAACGGACTGTAGCTGTTAGAGGTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU49842 True 2069 lncRNA 0.41 1 5771881 5773949

Neighbor

gene id symbol gene type direction distance location
CI01000006_05739275_05746584 NA coding upstream 24695 5738808 ~ 5747186 (+)
CI01000006_05729706_05734532 NA coding upstream 37213 5729268 ~ 5734668 (+)
CI01000006_05719079_05723838 NA coding upstream 47716 5719079 ~ 5724165 (+)
CI01000006_05617900_05693346 NCAM1, NCAM1A coding upstream 78535 5617900 ~ 5693346 (+)
CI01000006_05469329_05478118 NA coding upstream 293252 5469017 ~ 5478629 (+)
CI01000006_05821114_05830402 ZBTB16, ZBTB16A coding downstream 46489 5820438 ~ 5830561 (+)
CI01000006_05870762_05888691 USP28 coding downstream 96813 5870762 ~ 5889135 (+)
CI01000006_05893735_05901666 ZW10 coding downstream 119582 5893531 ~ 5902022 (+)
CI01000006_05903309_05926132 DLAT coding downstream 129360 5903309 ~ 5926132 (+)
CI01000006_05933352_05969576 NA coding downstream 159225 5933174 ~ 5970118 (+)
G43942 NA non-coding upstream 328958 5442465 ~ 5442923 (+)
G43934 NA non-coding upstream 343563 5428100 ~ 5428318 (+)
G43933 NA non-coding upstream 343797 5427850 ~ 5428084 (+)
G42224 NA non-coding upstream 373740 5397778 ~ 5398141 (+)
G42223 NA non-coding upstream 374176 5397430 ~ 5397705 (+)
G43898 NA non-coding downstream 15472 5789421 ~ 5790914 (+)
G43887 NA non-coding downstream 18968 5792917 ~ 5804161 (+)
G43970 NA non-coding downstream 298448 6072397 ~ 6072706 (+)
G43988 NA non-coding downstream 336217 6110166 ~ 6110406 (+)
G43990 NA non-coding downstream 346409 6120358 ~ 6120735 (+)
G43896 NA other upstream 106 5770089 ~ 5771775 (+)
G41996 NA other upstream 647732 5117206 ~ 5124149 (+)
CI01000006_03734862_03735227 BANF1, BANF1.S, BANF1.L other upstream 2035903 3734554 ~ 3736035 (+)
G41591 NA other upstream 2932460 2836167 ~ 2839421 (+)
G41424 NA other upstream 3111311 2645662 ~ 2660570 (+)
CI01000006_06104927_06109730 NA other downstream 334535 6104927 ~ 6109820 (+)
CI01000006_06122278_06122736 NA other downstream 348086 6122035 ~ 6122751 (+)
CI01000006_07167131_07168925 NA other downstream 1392840 7166778 ~ 7168925 (+)
G44872 NA other downstream 1582403 7356352 ~ 7387884 (+)
G45178 NA other downstream 1848042 7607604 ~ 7683671 (+)

Expression


Co-expression Network